2R7V
Crystal Structure of Rotavirus SA11 VP1/RNA (GGCUUU) Complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | EUF08094 | e2r7vA4 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: EUF08094 | ECOD (1.6) |
B [auth A] | Rotavirus_VP1 | e2r7vA3 | A: alpha complex topology | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology) | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: Rotavirus_VP1 | ECOD (1.6) |
B [auth A] | RdRP_4_1st | e2r7vA1 | A: alpha complex topology | X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology) | H: N-terminal additional helical subdomain in reovirus polymerase lambda3 | T: N-terminal additional helical subdomain in reovirus polymerase lambda3 | F: RdRP_4_1st | ECOD (1.6) |
B [auth A] | RdRP_4_2nd | e2r7vA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_4_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 1.20.120.1390 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
B [auth A] | 1.10.10.1990 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Viral RNA-directed RNA polymerase, 4-helical domain | CATH (4.3.0) |
B [auth A] | 3.30.70.2480 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B [auth A] | 1.10.357.80 | Mainly Alpha | Orthogonal Bundle | Tetracycline Repressor | domain 2 | CATH (4.3.0) |
B [auth A] | 3.30.230.140 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (4.3.0) |
B [auth A] | 1.20.120.1400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF12289 | Rotavirus VP1 C-terminal domain (Rotavirus_VP1) | Rotavirus VP1 C-terminal domain | This domain is the C-terminal bracelet domain of the rotavirus VP1 RNA-directed RNA polymerase. It surrounds the exit tunnel for dsRNA produced by replication and for the RNA template for transcription [1]. | Domain |
B [auth A] | PF02123 | Viral RNA-directed RNA-polymerase (RdRP_4) | Viral RNA-directed RNA-polymerase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR001795 | RNA-directed RNA polymerase, luteovirus | Family |
B [auth A] | IPR007097 | RNA-directed RNA polymerase, reovirus | Domain |
B [auth A] | IPR042032 | Viral RNA-directed RNA polymerase, 4-helical domain | Homologous Superfamily |
B [auth A] | IPR022071 | Rotavirus VP1 RNA-directed RNA polymerase, C-terminal | Domain |
B [auth A] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |