CRYSTAL STRUCTURE OF a DUF1285 family protein (SPO_0140) FROM SILICIBACTER POMEROYI DSS-3 AT 2.50 A RESOLUTION
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Rpf1_C | e2re3B1 | A: beta barrels | X: HTH | H: Nudix | T: Nudix | F: Rpf1_C | ECOD (v294.2) |
| A | DUF1285_N | e2re3A1 | A: beta barrels | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: DUF1285_N | ECOD (v294.2) |
| A | DUF1285_C | e2re3A2 | A: beta barrels | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: DUF1285_C | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.10.540.10 | Alpha Beta | Roll | duf1285 like fold | duf1285 like domain | CATH (4.3.0) |
| B | 2.30.270.10 | Mainly Beta | Roll | duf1285 protein fold | duf1285 protein | CATH (4.3.0) |
| B | 2.20.70.10 | Mainly Beta | Single Sheet | Ubiquitin Ligase Nedd4 | Chain: W | CATH (4.3.0) |
| A | 3.10.540.10 | Alpha Beta | Roll | duf1285 like fold | duf1285 like domain | CATH (4.3.0) |
| A | 2.30.270.10 | Mainly Beta | Roll | duf1285 protein fold | duf1285 protein | CATH (4.3.0) |
| A | 2.20.70.10 | Mainly Beta | Single Sheet | Ubiquitin Ligase Nedd4 | Chain: W | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF06938 | Domain of unknown function (DUF1285), N-terminal domain (DUF1285_N) | Domain of unknown function (DUF1285), N-terminal domain | This domain is found at the N-terminal end of several hypothetical bacterial proteins, including SPO0140 from Ruegeria pomeroyi (Swiss:Q5LWU5). It folds into a a beta-meander-alpha-helix- beta-meander core bound to a twisted mixed six-stranded beta-s ... | Domain | |
| PF21028 | Protein of unknown function (DUF1285), C-terminal domain (DUF1285_C) | Protein of unknown function (DUF1285), C-terminal domain | This domain is found at the C-terminal end of several hypothetical bacterial proteins. The structure revealed a superficial similarity of this domain to pleckstrin homology-like folds [1]. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR048342 | DUF1285, C-terminal domain | Domain | |
| IPR023361 | DUF1285, beta-roll domain superfamily | Homologous Superfamily | |
| IPR048341 | DUF1285, N-terminal domain | Domain | |
| IPR010707 | Protein of unknown function DUF1285 | Family |
