2VXA | pdb_00002vxa

H. halophila dodecin in complex with riboflavin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2vxal_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
K	d2vxak_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
J	d2vxaj_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
I	d2vxai_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
H	d2vxah_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
G	d2vxag_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
F	d2vxaf_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
E	d2vxae_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
D	d2vxad_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
C	d2vxac_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
B	d2vxab_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)
A	d2vxaa_	Alpha and beta proteins (a+b)	Dodecin subunit-like	Dodecin-like	automated matches	automated matches	(Halorhodospira halophila ) [TaxId: 1053 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dodecin-like	8086104	3000608	SCOP2B (2022-06-29)
A	SCOP2 Family	Dodecin-like	8086103	4000568	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dodecin-like	8086104	3000608	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e2vxaL1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
K		e2vxaK1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
J		e2vxaJ1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
I		e2vxaI1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
H		e2vxaH1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
G		e2vxaG1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
F		e2vxaF1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
E		e2vxaE1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
D		e2vxaD1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
C		e2vxaC1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
B		e2vxaB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Acetyltransf_3	F:	ECOD (20:10:01)
A		e2vxaA1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleic acid-binding protein	T: TetR_N	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
K	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
J	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
I	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
H	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
G	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
F	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
E	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
D	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
C	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
B	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)
A	3.30.1660.10	Alpha Beta	2-Layer Sandwich	Dodecin subunit-like	Flavin-binding protein dodecin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07311	Dodecin (Dodecin)	Dodecin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DODECIN	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036694	Dodecin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009923	Dodecin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025543	Dodecin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050049	Dodecin, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.