2VZX | pdb_00002vzx

Structural and spectroscopic characterization of photoconverting fluorescent protein Dendra2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vzxa_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
B	d2vzxb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
B	d2vzxb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
C	d2vzxc1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
C	d2vzxc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
D	d2vzxd_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
F	d2vzxf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
G	d2vzxg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
H	d2vzxh1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
H	d2vzxh2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
E	d2vzxe1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)
E	d2vzxe2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Dendronephthya sp. SSAL-2002 ) [TaxId: 191210 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Fluorescent proteins	8081034	4001049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GFP-like	8081035	3000576	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8081035	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RRM_1	e2vzxA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: RRM_1	ECOD (develop294)
B	Spt5-NGN	e2vzxB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
C	Spt5-NGN	e2vzxC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
D	Spt5-NGN	e2vzxD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
F	Spt5-NGN	e2vzxF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
G	Spt5-NGN	e2vzxG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
H	Spt5-NGN	e2vzxH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)
E	Spt5-NGN	e2vzxE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Green fluorescent protein	cation binding ion binding binding metal ion binding small molecule binding	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000786	Green fluorescent protein, GFP	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.