2WB0 | pdb_00002wb0

2.1 resolution structure of the C-terminal domain of the human adenovirus 5 ssDNA binding protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d2wb0x1	All alpha proteins	Domain of early E2A DNA-binding protein, ADDBP	Domain of early E2A DNA-binding protein, ADDBP	Domain of early E2A DNA-binding protein, ADDBP	Domain of early E2A DNA-binding protein, ADDBP	(Human adenovirus 5 ) [TaxId: 28285 ],	SCOPe (2.08)
A [auth X]	d2wb0x2	Small proteins	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP	First Zn-domain of early E2A DNA-binding protein, ADDBP	(Human adenovirus 5 ) [TaxId: 28285 ],	SCOPe (2.08)
A [auth X]	d2wb0x3	Small proteins	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP	Second Zn-domain of early E2A DNA-binding protein, ADDBP	(Human adenovirus 5 ) [TaxId: 28285 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	Domain of early E2A DNA-binding protein, ADDBP	8025291	4001006	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Zn-binding domains of ADDBP	8026960	4003784	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Zn-binding domains of ADDBP	8026966	4003784	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Domain of early E2A DNA-binding protein, ADDBP	8037670	3000418	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Zn-binding domains of ADDBP	8039339	3001491	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Zn-binding domains of ADDBP	8039345	3001491	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]		e2wb0X1	A: Suppressor of Fused, C-terminal domain	X: HTH	H: winged helix domain	T: GPW_gp25	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	1.10.269.10	Mainly Alpha	Orthogonal Bundle	Adenovirus Single-stranded Dna-binding Protein, domain 1	Adenovirus DNA-binding, N-terminal domain	CATH (4.3.0)
A [auth X]	3.90.148.10	Alpha Beta	Alpha-Beta Complex	Adenovirus Single-stranded DNA-binding Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF03728	Viral DNA-binding protein, zinc binding domain (Viral_DNA_Zn_bi)	Viral DNA-binding protein, zinc binding domain	This family represents the zinc binding domain of the viral DNA- binding protein, a multi functional protein involved in DNA replication and transcription control. Two copies of this domain are found at the C-terminus of many members of the family. ...	This family represents the zinc binding domain of the viral DNA- binding protein, a multi functional protein involved in DNA replication and transcription control. Two copies of this domain are found at the C-terminus of many members of the family.	Domain
A [auth X]	PF02236	Viral DNA-binding protein, all alpha domain (Viral_DNA_bi)	Viral DNA-binding protein, all alpha domain	This family represents a domain of the viral DNA- binding protein, a multi functional protein involved in DNA replication and transcription control.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	E2A DNA-BINDING PROTEIN	DNA binding binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding single-stranded DNA binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process viral genome replication viral process DNA biosynthetic process viral DNA strand displacement replication regulation of cellular process positive regulation of DNA replication positive regulation of biological process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biological process biological regulation regulation of macromolecule metabolic process positive regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication RNA metabolic process gene expression RNA biosynthetic process DNA-templated transcription	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR036367	Adenovirus DNA-binding, C-terminal domain superfamily	Homologous Superfamily
A [auth X]	IPR036368	Adenovirus DNA-binding, zinc binding domain superfamily	Homologous Superfamily
A [auth X]	IPR005376	Adenovirus DNA-binding, zinc-binding domain	Domain
A [auth X]	IPR037540	DNA-binding protein, Adenovirus	Family
A [auth X]	IPR003176	Adenovirus DNA-binding, all-alpha domain	Domain
A [auth X]	IPR036362	Adenovirus DNA-binding, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.