2WYH | pdb_00002wyh

Structure of the Streptococcus pyogenes family GH38 alpha-mannosidase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALAP1_Ce2wyhA3 A: a/b three-layered sandwichesX: DP domainH: DP domainT: DP domainF: LAP1_CECOD (v294.1)
Ae2wyhA6 A: a/b three-layered sandwichesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF:ECOD (v294.1)
BFlagellin_D3e2wyhB1 A: a/b three-layered sandwichesX: barrel domains in phase 1 flagellinH: barrel domains in phase 1 flagellinT: barrel domains in phase 1 flagellinF: Flagellin_D3ECOD (v294.1)
Be2wyhB5 A: a/b three-layered sandwichesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF:ECOD (v294.1)
BMoCoBD_2e2wyhB3 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MoCoBD_2ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01074Glycosyl hydrolases family 38 N-terminal domain (Glyco_hydro_38N)Glycosyl hydrolases family 38 N-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Domain
A, B
PF17677Glycosyl hydrolases family 38 C-terminal beta sandwich domain (Glyco_hydro38C2)Glycosyl hydrolases family 38 C-terminal beta sandwich domainThis domain is found at the C-terminal end of various glycosyl hydrolases belonging to family 38. The domain has a beta sandwich fold. Domain
A, B
PF09261Alpha mannosidase middle domain (Alpha-mann_mid)Alpha mannosidase middle domainMembers of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase [1]. Domain
A, B
PF07748Glycosyl hydrolases family 38 C-terminal domain (Glyco_hydro_38C)Glycosyl hydrolases family 38 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Domain
A, B
PF18438Glycosyl hydrolases family 38 C-terminal domain 1 (Glyco_hydro_38)Glycosyl hydrolases family 38 C-terminal domain 1The enzymatic hydrolysis of alpha-mannosides is catalyzed by glycoside hydrolases (GH), termed alpha-mannosidases. Streptococcal (Sp) GH38 alpha-mannosidase active on N-glycans and possibly O-glycans. SpGH38 structure can be considered as five domain ...The enzymatic hydrolysis of alpha-mannosides is catalyzed by glycoside hydrolases (GH), termed alpha-mannosidases. Streptococcal (Sp) GH38 alpha-mannosidase active on N-glycans and possibly O-glycans. SpGH38 structure can be considered as five domains: an N-terminal alpha/beta-domain, a three-helix bundle and three predominantly beta-sheet domains. This is the first of the three beta-sheet domains found in GH38, termed Beta-1. Structural analysis indicate that the beta-1 domain bows outward from the protein core, is involved in dimer interactions whilst also forming a lid 'above' and somewhat into the active centre of its dimer [1].
Domain