2XSO | pdb_00002xso

CRYSTAL STRUCTURE OF P4 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2xsoa1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ad2xsoa2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Cd2xsoc1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Cd2xsoc2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ed2xsoe1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ed2xsoe2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Gd2xsog1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Gd2xsog2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Id2xsoi1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Id2xsoi2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Kd2xsok1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Kd2xsok2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Md2xsom1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Md2xsom2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Od2xsoo1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Od2xsoo2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Qd2xsoq1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Qd2xsoq2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Sd2xsos1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Sd2xsos2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ud2xsou1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ud2xsou2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Wd2xsow1 All beta proteins ISP domain ISP domain automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Wd2xsow2 Alpha and beta proteins (a+b) TBP-like Bet v1-like automated matches automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Bd2xsob_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Dd2xsod_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Fd2xsof_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Hd2xsoh_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Jd2xsoj_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Ld2xsol_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Nd2xson_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Pd2xsop_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Rd2xsor_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Td2xsot_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Vd2xsov_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)
Xd2xsox_ Alpha and beta proteins (a+b) Cystatin-like NTF2-like Ring hydroxylating beta subunit automated matches (Paraburkholderia xenovorans LB400 ) [TaxId: 266265 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyNTF2-like 8074179 3000472 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A4HBTe2xsoA4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
C4HBTe2xsoC4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
E4HBTe2xsoE4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
G4HBTe2xsoG4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
I4HBTe2xsoI4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
K4HBTe2xsoK4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
M4HBTe2xsoM4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
O4HBTe2xsoO4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
QDHDPSe2xsoQ2 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
S4HBTe2xsoS4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
U4HBTe2xsoU4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
W4HBTe2xsoW4 A: alpha bundlesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: 4HBTECOD (develop294)
BDHDPSe2xsoB1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
DDHDPSe2xsoD1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
FDHDPSe2xsoF1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
HDHDPSe2xsoH1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
JDHDPSe2xsoJ1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
LDHDPSe2xsoL1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
NDHDPSe2xsoN1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
PDHDPSe2xsoP1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
RDHDPSe2xsoR1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
TDHDPSe2xsoT1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
VDHDPSe2xsoV1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)
XDHDPSe2xsoX1 A: alpha bundlesX: Lipocalins/StreptavidinH: SH3T: Transmembrane protein 14AF: DHDPSECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
A2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
C3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
C2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
E3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
G3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
G2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
I3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
I2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
K3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
K2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
M3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
M2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
O3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
O2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
Q3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
Q2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
S3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
S2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
U3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
U2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
W3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit Chain A, domain 1CATH (4.3.0)
W2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
B3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
D3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
F3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
H3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
J3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
L3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
N3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
P3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
R3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
T3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
V3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
X3.10.450.50 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF00848Ring hydroxylating alpha subunit (catalytic domain) (Ring_hydroxyl_A)Ring hydroxylating alpha subunit (catalytic domain)This family is the catalytic domain of aromatic-ring- hydroxylating dioxygenase systems. The active site contains a non-heme ferrous ion coordinated by three ligands. Domain
A, C, E, G, I
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
B, D, F, H, J
PF00866Ring hydroxylating beta subunit (Ring_hydroxyl_B)Ring hydroxylating beta subunitThis subunit has a similar structure to NTF-2 and scytalone dehydratase. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
BIPHENYL DIOXYGENASE SUBUNIT ALPHA - -
B, D, F, H, J
BIPHENYL DIOXYGENASE SUBUNIT BETA -

InterPro: Protein Family Classification InterPro Database Homepage