2YEQ | pdb_00002yeq

Structure of PhoD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PhoD-like	8044829	4004162	SCOP2 (2022-06-29)
A	SCOP2 Family	PhoD N-terminal domain-like	8045925	4004767	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Metallo-dependent phosphatases	8053377	3001067	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Purple acid phosphatase N-terminal domain-like	8053378	3002043	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Metallo-dependent phosphatases	8053377	3001067	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Purple acid phosphatase N-terminal domain-like	8053378	3002043	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PhoD	e2yeqA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PhoD	ECOD (v294.1)
A	Putative_PNPOx	e2yeqA2	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Putative_PNPOx	ECOD (v294.1)
B	Rrf2	e2yeqB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: Rrf2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.380	Mainly Beta	Sandwich	Immunoglobulin-like	Purple acid phosphatase-like, N-terminal	CATH (4.3.0)
A	3.60.21.70	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)
B	2.60.40.380	Mainly Beta	Sandwich	Immunoglobulin-like	Purple acid phosphatase-like, N-terminal	CATH (4.3.0)
B	3.60.21.70	Alpha Beta	4-Layer Sandwich	Purple Acid Phosphatase	chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09423	PhoD-like phosphatase (PhoD)	PhoD-like phosphatase		Domain
A, B	PF16655	PhoD-like phosphatase, N-terminal domain (PhoD_N)	PhoD-like phosphatase, N-terminal domain	This domain is found at the N-terminus of proteins in the PhoD family Pfam:PF09423.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ALKALINE PHOSPHATASE D	phosphoric ester hydrolase activity alkaline phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032093	Phospholipase D, N-terminal	Domain
A, B	IPR038607	PhoD-like superfamily	Homologous Superfamily
A, B	IPR018946	PhoD-like phosphatase, metallophosphatase domain	Domain
A, B	IPR052900	Phospholipid Metabolizing Enzymes	Family
A, B	IPR029052	Metallo-dependent phosphatase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.