2YJK | pdb_00002yjk

Structure of Dps from MICROBACTERIUM ARBORESCENS in the high iron form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2yjka_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
B	d2yjkb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
C	d2yjkc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
D	d2yjkd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
E	d2yjke_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
F	d2yjkf_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
G	d2yjkg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
H	d2yjkh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
I	d2yjki_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
J	d2yjkj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
K	d2yjkk_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
L	d2yjkl_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ferritin_1	e2yjkA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
B	Ferritin_1	e2yjkB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
C	Ferritin_1	e2yjkC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
D	Ferritin_1	e2yjkD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
E	Ferritin_1	e2yjkE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
F	Ferritin_1	e2yjkF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
G	Ferritin_1	e2yjkG1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
H	Ferritin_1	e2yjkH1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
I	Ferritin_1	e2yjkI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
J	Ferritin_1	e2yjkJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
K	Ferritin_1	e2yjkK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
L	Ferritin_1	e2yjkL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	AFP	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.