2YW3 | pdb_00002yw3

Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Aldolase	8070001	3000445	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aldolase	8070001	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8070001	3000445	SCOP2B (2022-06-29)
F	SCOP2 Family	Class I aldolase	8070000	4003216	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Aldolase	8070001	3000445	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8070001	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8070001	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C		e2yw3C1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)
D		e2yw3D1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)
E		e2yw3E1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)
F		e2yw3F1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)
B		e2yw3B1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)
A		e2yw3A1	A: Long alpha-hairpin	X: C-terminal UvrC-binding domain of UvrB	H: C-terminal UvrC-binding domain of UvrB	T: UVR	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
E	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01081	KDPG and KHG aldolase (Aldolase)	KDPG and KHG aldolase	This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase	2-dehydro-3-deoxy-phosphogluconate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000887	KDPG/KHG aldolase	Family
A, B, C, D, E A, B, C, D, E, F	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR031337	KDPG/KHG aldolase, active site 1	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.