2ZPY | pdb_00002zpy

Crystal structure of the mouse radxin FERM domain complexed with the mouse CD44 cytoplasmic peptide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2zpya1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2zpya2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2zpya3	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	First domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	FERM domain-like	8026370	4000747	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FERM central domain-like	8038749	3001227	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ubiquitin-like	8038750	3000157	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8038751	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e2zpyA1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Urease_alpha	F:	ECOD (20:10:01)
A	e2zpyA2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
A	e2zpyA3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09379	FERM N-terminal domain (FERM_N)	FERM N-terminal domain	This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.	Domain
A	PF09380	FERM C-terminal PH-like domain (FERM_C)	FERM C-terminal PH-like domain		Domain
A	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Radixin	protein kinase A binding protein binding binding ATPase binding enzyme binding protein domain specific binding cell adhesion molecule binding cytoskeletal protein binding actin binding	regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of cellular component organization organelle assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component organization organelle organization cellular component assembly regulation of organelle assembly cellular component organization or biogenesis localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle cell cycle regulation of cell cycle cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly microvillus organization microvillus assembly cell projection assembly cellular response to stimulus response to thyroid hormone response to stimulus response to endogenous stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular response to thyroid hormone stimulus cellular response to hormone stimulus regulation of localization regulation of postsynaptic neurotransmitter receptor diffusion trapping neurotransmitter receptor diffusion trapping regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization receptor diffusion trapping regulation of biological quality receptor localization to synapse postsynaptic neurotransmitter receptor diffusion trapping regulation of receptor localization to synapse adherens junction organization regulation of adherens junction organization cell junction organization cell-cell junction organization regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization actin filament capping actin filament-based process negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization cellular component disassembly barbed-end actin filament capping negative regulation of cellular component organization actin filament organization negative regulation of protein depolymerization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of cytoskeleton organization regulation of actin filament-based process regulation of protein-containing complex assembly negative regulation of protein-containing complex disassembly negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization regulation of actin filament polymerization actin polymerization or depolymerization protein polymerization regulation of actin filament organization actin cytoskeleton organization actin filament polymerization protein-containing complex organization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization negative regulation of organelle organization regulation of actin filament length regulation of actin cytoskeleton organization negative regulation of actin filament depolymerization protein depolymerization cytoskeleton organization regulation of anatomical structure size apical protein localization cellular response to growth factor stimulus cellular response to platelet-derived growth factor stimulus response to growth factor response to platelet-derived growth factor establishment of protein localization establishment of localization regulation of signaling small GTPase-mediated signal transduction signaling regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rap protein signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction Rap protein signal transduction catabolic process positive regulation of protein metabolic process macromolecule catabolic process regulation of primary metabolic process protein metabolic process regulation of protein metabolic process primary metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of protein catabolic process positive regulation of protein localization to early endosome regulation of protein localization protein localization to endosome protein localization to early endosome regulation of protein localization to endosome protein localization to organelle positive regulation of protein localization positive regulation of protein localization to endosome regulation of protein localization to early endosome developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of anatomical structure morphogenesis epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development epithelial cell development cell differentiation establishment of endothelial barrier establishment of protein localization to membrane establishment of protein localization to plasma membrane positive regulation of early endosome to late endosome transport transport vesicle-mediated transport establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport intracellular transport regulation of vesicle-mediated transport endosomal transport vesicle-mediated transport between endosomal compartments regulation of early endosome to late endosome transport early endosome to late endosome transport positive regulation of transport	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery sarcolemma plasma membrane membrane T-tubule apical part of cell stereocilium base stereocilium actin-based cell projection cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery sarcolemma plasma membrane membrane T-tubule apical part of cell stereocilium base stereocilium actin-based cell projection organelle stereocilium bundle neuron projection cluster of actin-based cell projections intracellular anatomical structure cytoplasm cytosol cell-cell junction adherens junction anchoring junction cell junction ruffle microvillus filopodium midbody cell tip cell pole focal adhesion cell-substrate junction myelin sheath plasma membrane region apical plasma membrane cell division site cleavage furrow cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle cytoskeleton membraneless organelle cortical actin cytoskeleton
B	CD44 antigen	phosphoprotein binding protein binding binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity cargo receptor activity transforming growth factor beta receptor binding type II transforming growth factor beta receptor binding signaling receptor binding cytokine receptor binding kinase binding enzyme binding protein kinase binding phosphoprotein binding protein binding binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity cargo receptor activity transforming growth factor beta receptor binding type II transforming growth factor beta receptor binding signaling receptor binding cytokine receptor binding kinase binding enzyme binding protein kinase binding epidermal growth factor receptor binding growth factor receptor binding channel regulator activity molecular function regulator activity transporter regulator activity glycosaminoglycan binding carbohydrate derivative binding hyaluronic acid binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus signal transduction multicellular organismal process homeostatic process leukocyte apoptotic process positive regulation of biological process regulation of programmed cell death regulation of neutrophil apoptotic process positive regulation of myeloid cell apoptotic process positive regulation of neutrophil apoptotic process regulation of immune system process myeloid cell homeostasis positive regulation of leukocyte apoptotic process positive regulation of immune system process positive regulation of cellular process regulation of leukocyte apoptotic process myeloid cell apoptotic process positive regulation of programmed cell death regulation of apoptotic process cell death positive regulation of apoptotic process neutrophil homeostasis neutrophil apoptotic process multicellular organismal-level homeostasis leukocyte homeostasis immune system process inflammatory cell apoptotic process homeostasis of number of cells apoptotic process programmed cell death regulation of myeloid cell apoptotic process immune response regulation of adaptive immune response adaptive immune response positive regulation of response to stimulus regulation of response to stimulus positive regulation of immune response regulation of immune response positive regulation of adaptive immune response regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process regulation of B cell apoptotic process negative regulation of biological process lymphocyte apoptotic process negative regulation of leukocyte apoptotic process negative regulation of mature B cell apoptotic process negative regulation of cellular process regulation of lymphocyte apoptotic process mature B cell apoptotic process negative regulation of programmed cell death B cell apoptotic process negative regulation of B cell apoptotic process B cell homeostasis negative regulation of apoptotic process regulation of mature B cell apoptotic process lymphocyte homeostasis negative regulation of lymphocyte apoptotic process regulation of growth regulation of cellular component organization growth regulation of cell growth cell growth cellular component organization cellular component organization or biogenesis cell migration cell motility response to fibroblast growth factor cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus response to growth factor cellular response to fibroblast growth factor stimulus cell junction organization postsynapse organization synapse organization monocyte aggregation cell adhesion cell-cell adhesion leukocyte cell-cell adhesion leukocyte aggregation wound healing wound healing involved in inflammatory response defense response response to stress inflammatory response to wounding inflammatory response response to wounding positive regulation of cell adhesion regulation of cell adhesion positive regulation of cell-cell adhesion heterotypic cell-cell adhesion positive regulation of heterotypic cell-cell adhesion regulation of cell-cell adhesion regulation of heterotypic cell-cell adhesion mesonephric epithelium development kidney epithelium development nephron morphogenesis branching morphogenesis of an epithelial tube nephron tubule morphogenesis nephron epithelium morphogenesis nephron tubule development renal system development multicellular organism development ureteric bud morphogenesis tube morphogenesis branching involved in ureteric bud morphogenesis anatomical structure development renal tubule development animal organ morphogenesis epithelial tube morphogenesis nephron development system development nephron epithelium development developmental process ureteric bud development epithelium development tube development mesonephros development animal organ development morphogenesis of an epithelium tissue development tissue morphogenesis anatomical structure morphogenesis kidney morphogenesis morphogenesis of a branching structure mesonephric tubule morphogenesis kidney development mesonephric tubule development renal tubule morphogenesis morphogenesis of a branching epithelium carbohydrate derivative catabolic process catabolic process hyaluronan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process macromolecule catabolic process glycosaminoglycan catabolic process hyaluronan metabolic process aminoglycan metabolic process plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development nervous system development generation of neurons neurogenesis neuron differentiation cell differentiation neuron development localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport regulation of modification of synaptic structure regulation of synapse organization regulation of synapse structure or activity regulation of modification of postsynaptic structure regulation of biological quality modification of synaptic structure modification of postsynaptic structure positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling macrophage fusion syncytium formation by plasma membrane fusion anatomical structure formation involved in morphogenesis cell-cell fusion syncytium formation negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress DNA damage response, signal transduction by p53 class mediator negative regulation of cell communication cellular response to stress regulation of response to stress regulation of signal transduction by p53 class mediator negative regulation of DNA damage response, signal transduction by p53 class mediator regulation of DNA damage response, signal transduction by p53 class mediator negative regulation of signal transduction by p53 class mediator negative regulation of response to stimulus signal transduction by p53 class mediator negative regulation of signal transduction DNA damage response signal transduction in response to DNA damage regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response response to external stimulus regulation of inflammatory response negative regulation of response to external stimulus negative regulation of defense response regulation of developmental process plasma membrane bounded cell projection morphogenesis cell morphogenesis regulation of cell morphogenesis cell projection morphogenesis regulation of lamellipodium organization regulation of lamellipodium morphogenesis regulation of anatomical structure morphogenesis regulation of cell projection organization lamellipodium organization lamellipodium morphogenesis regulation of plasma membrane bounded cell projection organization T cell activation cell activation lymphocyte activation leukocyte activation regulation of intrinsic apoptotic signaling pathway in response to DNA damage regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator negative regulation of apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway by p53 class mediator regulation of apoptotic signaling pathway regulation of intrinsic apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator regulation of intrinsic apoptotic signaling pathway by p53 class mediator prostate gland development reproductive process gland development developmental process involved in reproduction prostate gland epithelium morphogenesis gland morphogenesis reproductive structure development reproductive system development urogenital system development prostate gland morphogenesis branching involved in prostate gland morphogenesis Wnt signaling pathway positive regulation of monocyte aggregation positive regulation of leukocyte cell-cell adhesion regulation of leukocyte cell-cell adhesion regulation of monocyte aggregation negative regulation of lymphocyte proliferation regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation alpha-beta T cell proliferation lymphocyte proliferation alpha-beta T cell activation regulation of leukocyte proliferation cell population proliferation regulation of CD4-positive, alpha-beta T cell proliferation negative regulation of CD4-positive, alpha-beta T cell activation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion mononuclear cell proliferation regulation of cell population proliferation negative regulation of cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation negative regulation of lymphocyte activation leukocyte proliferation negative regulation of mononuclear cell proliferation regulation of alpha-beta T cell proliferation CD4-positive, alpha-beta T cell activation regulation of multicellular organismal process T cell proliferation regulation of lymphocyte proliferation CD4-positive, alpha-beta T cell proliferation negative regulation of cell population proliferation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of alpha-beta T cell proliferation regulation of CD4-positive, alpha-beta T cell activation negative regulation of immune system process negative regulation of CD4-positive, alpha-beta T cell proliferation regulation of mononuclear cell proliferation negative regulation of alpha-beta T cell activation regulation of lymphocyte activation epiboly involved in wound healing morphogenesis of an epithelial sheet epiboly wound healing, spreading of cells regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation regulation of cell development negative regulation of T cell differentiation T cell differentiation negative regulation of hemopoiesis negative regulation of leukocyte differentiation negative regulation of lymphocyte differentiation leukocyte differentiation regulation of T cell differentiation negative regulation of regulatory T cell differentiation negative regulation of cell differentiation regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis negative regulation of developmental process regulation of regulatory T cell differentiation negative regulation of cell development regulatory T cell differentiation regulation of hemopoiesis	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm cytosol basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane intracellular anatomical structure cytoplasm cytosol basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane synapse cell junction glutamatergic synapse membrane-bounded organelle intracellular organelle Golgi apparatus organelle intracellular membrane-bounded organelle endomembrane system cell projection actin-based cell projection microvillus plasma membrane bounded cell projection postsynapse apical part of cell apical plasma membrane membrane microdomain membrane raft presynapse protein-containing complex macrophage migration inhibitory factor receptor complex receptor complex cell leading edge leading edge membrane lamellipodium membrane cell projection membrane lamellipodium extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000299	FERM domain	Domain
A	IPR019748	FERM central domain	Domain
A	IPR018980	FERM, C-terminal PH-like domain	Domain
A	IPR000798	Ezrin/radixin/moesin-like	Family
A	IPR008954	Moesin tail domain superfamily	Homologous Superfamily
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR011259	Ezrin/radixin/moesin, C-terminal	Domain
A	IPR019747	FERM conserved site	Conserved Site
A	IPR018979	FERM, N-terminal	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR041789	ERM family, FERM domain C-lobe	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR046810	Ezrin/radixin/moesin, alpha-helical domain	Domain
A	IPR019749	Band 4.1 domain	Domain
A	IPR011174	Ezrin/radixin/moesin	Family
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B	IPR016187	C-type lectin fold	Homologous Superfamily
B	IPR043210	CD44 antigen-like	Family
B	IPR001231	CD44 antigen	Family
B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
B	IPR000538	Link domain	Domain