3A3I
Crystal structure of penicillin binding protein 4 (dacB) from Haemophilus influenzae, complexed with ampicillin (AIX)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3a3ia1 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | Dac-like | DD-carboxypeptidase DacB | (Haemophilus influenzae ) [TaxId: 727 ], | SCOPe (2.08) |
A | d3a3ia2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Haemophilus influenzae ) [TaxId: 727 ], | SCOPe (2.08) |
B | d3a3ib1 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | Dac-like | DD-carboxypeptidase DacB | (Haemophilus influenzae ) [TaxId: 727 ], | SCOPe (2.08) |
B | d3a3ib2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Haemophilus influenzae ) [TaxId: 727 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_S13_2nd | e3a3iA1 | A: beta complex topology | X: Inserted beta sandwich domain in Dac-like proteins (From Topology) | H: Inserted beta sandwich domain in Dac-like proteins (From Topology) | T: Inserted beta sandwich domain in Dac-like proteins | F: Peptidase_S13_2nd | ECOD (1.6) |
A | Peptidase_S13_3rd | e3a3iA2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_3rd | ECOD (1.6) |
A | Peptidase_S13_4th | e3a3iA3 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_4th | ECOD (1.6) |
A | Peptidase_S13_1st | e3a3iA4 | A: a/b three-layered sandwiches | X: DTD-like | H: Inserted a+b domain in Dac-like proteins (From Topology) | T: Inserted a+b domain in Dac-like proteins | F: Peptidase_S13_1st | ECOD (1.6) |
B | Peptidase_S13_2nd | e3a3iB1 | A: beta complex topology | X: Inserted beta sandwich domain in Dac-like proteins (From Topology) | H: Inserted beta sandwich domain in Dac-like proteins (From Topology) | T: Inserted beta sandwich domain in Dac-like proteins | F: Peptidase_S13_2nd | ECOD (1.6) |
B | Peptidase_S13_3rd | e3a3iB2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_3rd | ECOD (1.6) |
B | Peptidase_S13_4th | e3a3iB3 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S13_4th | ECOD (1.6) |
B | Peptidase_S13_1st | e3a3iB4 | A: a/b three-layered sandwiches | X: DTD-like | H: Inserted a+b domain in Dac-like proteins (From Topology) | T: Inserted a+b domain in Dac-like proteins | F: Peptidase_S13_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
A | 3.50.80.20 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
B | 3.40.710.10 | Alpha Beta | 3-Layer(aba) Sandwich | Beta-lactamase | DD-peptidase/beta-lactamase superfamily | CATH (4.3.0) |
B | 3.50.80.20 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02113 | D-Ala-D-Ala carboxypeptidase 3 (S13) family (Peptidase_S13) | D-Ala-D-Ala carboxypeptidase 3 (S13) family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Penicillin-binding protein 4 | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR000667 | Peptidase S13, D-Ala-D-Ala carboxypeptidase C | Family |