3BP8 | pdb_00003bp8

Crystal structure of Mlc/EIIB complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3bp8a1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	ROK associated domain	Mlc protein N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d3bp8a2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	ROK	Mlc protein	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d3bp8b1	All alpha proteins	DNA/RNA-binding 3-helical bundle	'Winged helix' DNA-binding domain	ROK associated domain	Mlc protein N-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d3bp8b2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	ROK	Mlc protein	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d3bp8c_	Alpha and beta proteins (a+b)	Homing endonuclease-like	Glucose permease domain IIB	Glucose permease domain IIB	Glucose permease domain IIB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d3bp8d_	Alpha and beta proteins (a+b)	Homing endonuclease-like	Glucose permease domain IIB	Glucose permease domain IIB	Glucose permease domain IIB	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Winged helix DNA-binding domain	8017627	3000034	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8092406	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8017630	3000092	SCOP2B (2022-06-29)
C	SCOP2 Family	Glucose permease domain IIB	8027038	4001694	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Glucose permease domain IIB	8039417	3000258	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Glucose permease domain IIB	8039417	3000258	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Phage_CII	e3bp8A1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Phage_CII	ECOD (develop294)
A	Thioredoxin	e3bp8A2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (develop294)
B	Phage_CII	e3bp8B1	A: alpha bundles	X: EGF-like	H: YozE-like	T: Ribbon-helix-helix	F: Phage_CII	ECOD (develop294)
B	Thioredoxin	e3bp8B2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (develop294)
C	PTS_EIIB	e3bp8C1	A: a+b two layers	X: Glucose permease domain IIB-like	H: Glucose permease domain IIB	T: Glucose permease domain IIB	F: PTS_EIIB	ECOD (develop294)
D	T2SSM	e3bp8D1	A: alpha bundles	X: EGF-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: T2SSM	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.1360.60	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
D	3.30.1360.60	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00480	ROK family (ROK)	ROK family	-	Family
C, D	PF00367	phosphotransferase system, EIIB (PTS_EIIB)	phosphotransferase system, EIIB		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative NAGC-like transcriptional regulator	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm
C, D	PTS system glucose-specific EIICB component	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups active transmembrane transporter activity protein-N(PI)-phosphohistidine-sugar phosphotransferase activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity phosphotransferase activity, alcohol group as acceptor monosaccharide transmembrane transporter activity sugar transmembrane transporter activity D-glucose transmembrane transporter activity hexose transmembrane transporter activity kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups active transmembrane transporter activity protein-N(PI)-phosphohistidine-sugar phosphotransferase activity transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity phosphotransferase activity, alcohol group as acceptor monosaccharide transmembrane transporter activity sugar transmembrane transporter activity D-glucose transmembrane transporter activity hexose transmembrane transporter activity protein-phosphocysteine-sugar phosphotransferase activity protein-phosphocysteine-glucose phosphotransferase system transporter activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization carbohydrate transmembrane transport hexose transmembrane transport D-glucose transmembrane transport monosaccharide transmembrane transport hexose import across plasma membrane D-glucose import across plasma membrane	cellular anatomical structure membrane protein-containing complex transmembrane transporter complex membrane protein complex transporter complex cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR000600	ROK family	Family
C, D	IPR018113	Phosphotransferase system EIIB, cysteine phosphorylation site	Conserved Site
C, D	IPR013013	Phosphotransferase system, EIIC component, type 1	Domain
C, D	IPR011299	PTS system glucose-specific IIBC component	Domain
C, D	IPR036878	Glucose permease domain IIB	Homologous Superfamily
C, D	IPR050429	Phosphotransferase System Glucose-Specific EIICBA	Family
C, D	IPR001996	Phosphotransferase system, IIB component, type 1	Domain
C, D	IPR004719	Phosphotransferase system, maltose/glucose-specific subfamily IIC component	Domain
C, D	IPR003352	Phosphotransferase system, EIIC	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.