3CGL | pdb_00003cgl

Crystal Structure and Raman Studies of dsFP483, a Cyan Fluorescent Protein from Discosoma striata

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3cglf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)
E	d3cgle_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)
D	d3cgld_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)
C	d3cglc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)
B	d3cglb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)
A	d3cgla_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Striped mushroom (Discosoma striata ) [TaxId: 105400 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	GFP-like	8083470	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8083470	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8083470	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8083470	3000576	SCOP2B (2022-06-29)
A	SCOP2 Family	Fluorescent proteins	8083469	4001049	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GFP-like	8083470	3000576	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Melibiase_C	e3cglF2	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Melibiase_C	ECOD (develop294)
E	Leuk-A4-hydro_C	e3cglE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (develop294)
D	Leuk-A4-hydro_C	e3cglD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (develop294)
C	Leuk-A4-hydro_C	e3cglC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (develop294)
B	Leuk-A4-hydro_C	e3cglB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Leuk-A4-hydro_C	ECOD (develop294)
A	GFP	e3cglA1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: GFP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	GFP-like fluorescent chromoprotein dsFP483	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000786	Green fluorescent protein, GFP	Family
A, B, C, D, E A, B, C, D, E, F	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F	CRQ	Parent Component: GLN, TYR, GLY RESID: AA0189 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.