3D01

Crystal structure of the protein Atu1372 with unknown function from Agrobacterium tumefaciens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3d01b1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d3d01b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d3d01c1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d3d01c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d3d01e1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
E	d3d01e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
F	d3d01f1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
F	d3d01f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
G	d3d01g1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
G	d3d01g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
I	d3d01i1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
I	d3d01i2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
J	d3d01j1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
J	d3d01j2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
K	d3d01k1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
K	d3d01k2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d3d01a1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d3d01a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d3d01d1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
D	d3d01d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
H	d3d01h1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
H	d3d01h2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
L	d3d01l1	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	YjgF-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
L	d3d01l2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
A	SCOP2 Family	YjgF/L-PSP	8059858	4001510	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YjgF-like	8059859	3001733	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	YjgF-like	8059859	3001733	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	YjgF_endoribonc	e3d01B1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
C	YjgF_endoribonc	e3d01C1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
E	YjgF_endoribonc	e3d01E1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
F	YjgF_endoribonc	e3d01F1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
G	YjgF_endoribonc	e3d01G1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
I	YjgF_endoribonc	e3d01I1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
J	YjgF_endoribonc	e3d01J1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
K	YjgF_endoribonc	e3d01K1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
A	YjgF_endoribonc	e3d01A1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
D	YjgF_endoribonc	e3d01D1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
H	YjgF_endoribonc	e3d01H1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)
L	YjgF_endoribonc	e3d01L1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: YjgF-like (From Topology)	T: YjgF-like	F: YjgF_endoribonc	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
E	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
F	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
G	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
I	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
J	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
K	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
A	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
D	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
H	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
L	3.30.1330.40	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF14588	YjgF/chorismate_mutase-like, putative endoribonuclease (YjgF_endoribonc)	YjgF/chorismate_mutase-like, putative endoribonuclease	YjgF_Endoribonuc is a putative endoribonuclease. The structure is of beta-alpha-beta-alpha-beta(2) domains common both to bacterial chorismate mutase and to members of the YjgF family. These proteins form trimers with a three-fold symmetry with three ...	YjgF_Endoribonuc is a putative endoribonuclease. The structure is of beta-alpha-beta-alpha-beta(2) domains common both to bacterial chorismate mutase and to members of the YjgF family. These proteins form trimers with a three-fold symmetry with three closely-packed beta-sheets. The YjgF family is a large, widely distributed family of proteins of unknown biochemical function that are highly conserved among eubacteria, archaea and eukaryotes [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035959	RutC-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013813	Endoribonuclease L-PSP/chorismate mutase-like	Domain

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3D01

Crystal structure of the protein Atu1372 with unknown function from Agrobacterium tumefaciens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage