3DA7 | pdb_00003da7

A conformationally strained, circular permutant of barnase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3da7h_	Alpha and beta proteins (a/b)	Barstar-like	Barstar-related	Barstar-related	automated matches	(Bacillus amyloliquefaciens ) [TaxId: 1390 ],	SCOPe (2.08)
F	d3da7f_	Alpha and beta proteins (a/b)	Barstar-like	Barstar-related	Barstar-related	automated matches	(Bacillus amyloliquefaciens ) [TaxId: 1390 ],	SCOPe (2.08)
D	d3da7d_	Alpha and beta proteins (a/b)	Barstar-like	Barstar-related	Barstar-related	automated matches	(Bacillus amyloliquefaciens ) [TaxId: 1390 ],	SCOPe (2.08)
C	d3da7c_	Alpha and beta proteins (a/b)	Barstar-like	Barstar-related	Barstar-related	automated matches	(Bacillus amyloliquefaciens ) [TaxId: 1390 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Barstar-related	8043969	3000977	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Barstar-related	8043969	3000977	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Barstar-related	8043969	3000977	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Barstar-related	8043969	3000977	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	RdRP_3	e3da7H1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
F	RdRP_3	e3da7F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
D	RdRP_3	e3da7D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
C	MHC_II_alpha	e3da7C1	A: a/b three-layered sandwiches	X: TAZ domain	H: TAZ domain	T: Lipocalins	F: MHC_II_alpha	ECOD (v294.1)
G	RdRP_3	e3da7G1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
E	RdRP_3	e3da7E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
B	RdRP_3	e3da7B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RdRP_3	ECOD (v294.1)
A	MHC_II_alpha	e3da7A1	A: a/b three-layered sandwiches	X: TAZ domain	H: TAZ domain	T: Lipocalins	F: MHC_II_alpha	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.370.10	Alpha Beta	2-Layer Sandwich	Barnase	Chain D	CATH (4.3.0)
F	3.30.370.10	Alpha Beta	2-Layer Sandwich	Barnase	Chain D	CATH (4.3.0)
D	3.30.370.10	Alpha Beta	2-Layer Sandwich	Barnase	Chain D	CATH (4.3.0)
C	3.30.370.10	Alpha Beta	2-Layer Sandwich	Barnase	Chain D	CATH (4.3.0)
G	3.40.20.20	Alpha Beta	3-Layer(aba) Sandwich	Severin		CATH (4.3.0)
E	3.40.20.20	Alpha Beta	3-Layer(aba) Sandwich	Severin		CATH (4.3.0)
B	3.40.20.20	Alpha Beta	3-Layer(aba) Sandwich	Severin		CATH (4.3.0)
A	3.40.20.20	Alpha Beta	3-Layer(aba) Sandwich	Severin		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, F, H	Barstar	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm
A, B, E, G	Barnase circular permutant	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity hydrolase activity RNA binding binding nucleic acid binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, F, H	IPR000468	Barstar (barnase inhibitor)	Domain
C, D, F, H	IPR035905	Barstar-like superfamily	Homologous Superfamily
A, B, E, G	IPR000026	Guanine-specific ribonuclease N1-like	Family
A, B, E, G	IPR053753	Ribonuclease N1/T1-like	Homologous Superfamily
A, B, E, G	IPR001887	Barnase	Family
A, B, E, G	IPR016191	Ribonuclease/ribotoxin	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.