3DFH | pdb_00003dfh

crystal structure of putative mandelate racemase / muconate lactonizing enzyme from Vibrionales bacterium SWAT-3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3dfhc2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
C	d3dfhc1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
C	d3dfhc3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
B	d3dfhb2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
B	d3dfhb1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
B	d3dfhb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
A	d3dfha2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Enolase C-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
A	d3dfha1	Alpha and beta proteins (a+b)	Enolase N-terminal domain-like	Enolase N-terminal domain-like	automated matches	automated matches	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)
A	d3dfha3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	RasGEF	e3dfhC1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (v294.2)
C	RPA43_OB	e3dfhC3	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: RPA43_OB	ECOD (v294.2)
B	RasGEF	e3dfhB1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: RasGEF	ECOD (v294.2)
B	RPA43_OB	e3dfhB3	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: RPA43_OB	ECOD (v294.2)
A	GFP	e3dfhA1	A: beta barrels	X: Profilin-like	H: sensor domains	T: sensor domains	F: GFP	ECOD (v294.2)
A	RPA43_OB	e3dfhA3	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: RPA43_OB	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
C	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
B	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)
A	3.30.390.10	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.20.20.120	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Enolase-like C-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	mandelate racemase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding	catabolic process metabolic process cellular process amino acid metabolic process primary metabolic process amino acid catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR034589	D-mannonate dehydratase-like	Family
A, B, C	IPR034593	D-galactonate dehydratase DgoD-like	Family
A, B, C	IPR029065	Enolase_C-like	Unknown
A, B, C	IPR018110	Mandelate racemase/muconate lactonizing enzyme, conserved site	Conserved Site
A, B, C	IPR013342	Mandelate racemase, C-terminal domain	Domain
A, B, C	IPR029017	Enolase-like, N-terminal	Homologous Superfamily
A, B, C	IPR036849	Enolase-like, C-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR013341	Mandelate racemase, N-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.