Crystal structure of the human TLR4-human MD-2-E.coli LPS Ra complex
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e3fxiA1 | A: Lipocalins/Streptavidin | X: Enterocin 7A and 7B | H: Enterocin 7A and 7B | T: | F: | ECOD (20:10:01) | |
| B | e3fxiB1 | A: Lipocalins/Streptavidin | X: SAM/DNA-glycosylase | H: SAM domain-like | T: Rieske | F: | ECOD (20:10:01) | |
| C | e3fxiC1 | A: UBC-like | X: UBC-like | H: UBC-like | T: C1-set | F: | ECOD (20:10:01) | |
| D | e3fxiD1 | A: HTH | X: HTH | H: tetra-helical, lambda repressor-like | T: | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
| B | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
| C | 2.60.40.770 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
| D | 2.60.40.770 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13855 | Leucine rich repeat (LRR_8) | Leucine rich repeat | - | Repeat | |
| PF12799 | Leucine Rich repeats (2 copies) (LRR_4) | Leucine Rich repeats (2 copies) | - | Repeat | |
| PF02221 | ML domain (E1_DerP2_DerF2) | ML domain | ML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2 (Swiss:P49278). It has been implicate in lipid recognition, particularly in the recognition of pa ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR035897 | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Homologous Superfamily | |
| IPR000483 | Cysteine-rich flanking region, C-terminal | Domain | |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | Domain | |
| IPR025875 | Leucine rich repeat 4 | Repeat | |
| IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
| IPR001611 | Leucine-rich repeat | Repeat | |
| IPR017241 | Toll-like receptor | Family | |
| IPR003591 | Leucine-rich repeat, typical subtype | Repeat | |
| IPR003172 | MD-2-related lipid-recognition domain | Domain | |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
| IPR039217 | Lymphocyte antigen 96 | Family |














