3G9K | pdb_00003g9k

Crystal structure of Bacillus anthracis transpeptidase enzyme CapD

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]	NUDIX	e3g9kF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: NUDIX	ECOD (develop294)
C [auth D]	MG1	e3g9kD1	A: alpha bundles	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: MG1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth F]	3.60.20.40	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Gamma-glutamyltranspeptidase, small (S) subunit	CATH (4.3.0)
B [auth S]	3.60.20.40	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Gamma-glutamyltranspeptidase, small (S) subunit	CATH (4.3.0)
C [auth D]	1.10.246.230	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
A [auth L]	1.10.246.230	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth S], D [auth F]	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain
A [auth L], C [auth D]	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth S], D [auth F]	Capsule biosynthesis protein capD	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity transferase activity	carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis capsule polysaccharide biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis capsule polysaccharide biosynthetic process external encapsulating structure organization proteolysis protein metabolic process	-
A [auth L], C [auth D]	Capsule biosynthesis protein capD	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity transferase activity	carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis capsule polysaccharide biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process primary metabolic process macromolecule biosynthetic process cellular component organization capsule organization polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis capsule polysaccharide biosynthetic process external encapsulating structure organization proteolysis protein metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth S], D [auth F]	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
B [auth S], D [auth F]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
B [auth S], D [auth F]	IPR051792	Gamma-glutamyltransferase, bacteria	Family
A [auth L], C [auth D]	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
A [auth L], C [auth D]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A [auth L], C [auth D]	IPR051792	Gamma-glutamyltransferase, bacteria	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.