Chicken cytochrome BC1 complex with ascochlorin bound at QO and QI sites


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068575 3000806 SCOP2B (2022-06-29)
R [auth U]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068575 3000806 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8073735 3000770 SCOP2B (2022-06-29)
Q [auth T]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8073735 3000770 SCOP2B (2022-06-29)
P [auth S]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068577 3000797 SCOP2B (2022-06-29)
FSCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068577 3000797 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes 8042108 3000517 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8042105 3000966 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyTransmembrane di-heme cytochromes 8042108 3000517 SCOP2B (2022-06-29)
M [auth P]SCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8042105 3000966 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068589 3000779 SCOP2B (2022-06-29)
T [auth W]SCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 8068589 3000779 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EAcyl-CoA_dh_Ne3h1lE2 A: beta barrelsX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: Acyl-CoA_dh_NECOD (v294.2)
EDNA_gyraseB_C,Toprime3h1lE3 A: beta barrelsX: Trefoil/Plexin domain-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DNA_gyraseB_C,ToprimECOD (v294.2)
O [auth R]Acyl-CoA_dh_Ne3h1lR2 A: beta barrelsX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: Acyl-CoA_dh_NECOD (v294.2)
O [auth R]DNA_gyraseB_C,Toprime3h1lR3 A: beta barrelsX: Trefoil/Plexin domain-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DNA_gyraseB_C,ToprimECOD (v294.2)
ImRNA_cap_Ce3h1lI1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: mRNA_cap_CECOD (v294.2)
HPTEe3h1lH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
R [auth U]PTEe3h1lU1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
GPTEe3h1lG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
Q [auth T]PTEe3h1lT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
P [auth S]PTEe3h1lS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
FPTEe3h1lF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
DPTEe3h1lD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
N [auth Q]PTEe3h1lQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
CPTEe3h1lC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
M [auth P]PTEe3h1lP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
L [auth O]PTEe3h1lO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
BPTEe3h1lB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
JPTEe3h1lJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
T [auth W]PTEe3h1lW1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
APTEe3h1lA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)
K [auth N]PTEe3h1lN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PTEECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
O [auth R]1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
O [auth R]2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
I2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex Chain ICATH (4.3.0)
S [auth V]2.10.210.10 Mainly Beta Ribbon Cytochrome Bc1 Complex Chain ICATH (4.3.0)
H1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
R [auth U]1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
G1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
Q [auth T]1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
P [auth S]1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
F1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
D1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
D1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
N [auth Q]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
N [auth Q]1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
C1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
M [auth P]1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
L [auth O]3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
B3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
J1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)
T [auth W]1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)
A3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
K [auth N]3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E,
O [auth R]
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
E,
O [auth R]
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
I,
S [auth V]
PF09165Ubiquinol-cytochrome c reductase 8 kDa, N-terminal (Ubiq-Cytc-red_N)Ubiquinol-cytochrome c reductase 8 kDa, N-terminalMembers of this family adopt a structure consisting of many antiparallel beta sheets, with few alpha helices, in a non-globular arrangement. They are required for proper functioning of the respiratory chain [1]. Domain
C,
M [auth P]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petDDomain
C,
M [auth P]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petBDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E,
O [auth R]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
I,
S [auth V]
Cytochrome b-c1 complex subunit Rieske, mitochondrial
H,
R [auth U]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII-
G,
Q [auth T]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE UBIQUINONE-BINDING PROTEIN QP-C-
F,
P [auth S]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 14 KDA PROTEIN-
D,
N [auth Q]
MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN -
C,
M [auth P]
Cytochrome b
B,
L [auth O]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2 -
J,
T [auth W]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 7.2 KDA PROTEIN-
A,
K [auth N]
MITOCHONDRIAL UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN I -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E,
O [auth R]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
E,
O [auth R]
IPR014349Rieske iron-sulphur proteinFamily
E,
O [auth R]
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
E,
O [auth R]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
E,
O [auth R]
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
E,
O [auth R]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
E,
O [auth R]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
E,
O [auth R]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
E,
O [auth R]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
I,
S [auth V]
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
I,
S [auth V]
IPR014349Rieske iron-sulphur proteinFamily
I,
S [auth V]
IPR011070Globular protein, non-globular alpha/beta subunitHomologous Superfamily
I,
S [auth V]
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
I,
S [auth V]
IPR015248Ubiquinol-cytochrome c reductase iron-sulphur subunit, N-terminalDomain
I,
S [auth V]
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
I,
S [auth V]
IPR005805Rieske iron-sulphur protein, C-terminalDomain
I,
S [auth V]
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
I,
S [auth V]
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
H,
R [auth U]
IPR003422Cytochrome b-c1 complex, subunit 6Family
H,
R [auth U]
IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
H,
R [auth U]
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
G,
Q [auth T]
IPR004205Cytochrome b-c1 complex subunit 8Family
G,
Q [auth T]
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
F,
P [auth S]
IPR003197Cytochrome b-c1 complex subunit 7Family
F,
P [auth S]
IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
D,
N [auth Q]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
D,
N [auth Q]
IPR002326Cytochrome c1Family
D,
N [auth Q]
IPR009056Cytochrome c-like domainDomain
D,
N [auth Q]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
C,
M [auth P]
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
C,
M [auth P]
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
C,
M [auth P]
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
C,
M [auth P]
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
C,
M [auth P]
IPR005798Cytochrome b/b6, C-terminalDomain
C,
M [auth P]
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
C,
M [auth P]
IPR030689Cytochrome bFamily
C,
M [auth P]
IPR005797Cytochrome b/b6, N-terminal domainDomain
B,
L [auth O]
IPR007863Peptidase M16, C-terminalDomain
B,
L [auth O]
IPR011765Peptidase M16, N-terminalDomain
B,
L [auth O]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
B,
L [auth O]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily
J,
T [auth W]
IPR008027Cytochrome b-c1 complex subunit 9Family
J,
T [auth W]
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily
A,
K [auth N]
IPR007863Peptidase M16, C-terminalDomain
A,
K [auth N]
IPR011765Peptidase M16, N-terminalDomain
A,
K [auth N]
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
A,
K [auth N]
IPR050361Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase ComplexFamily