3J2W | pdb_00003j2w

Electron cryo-microscopy of Chikungunya virus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
S [auth K]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
T [auth L]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
R [auth J]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
Q [auth I]SCOP2 FamilyViral capsid proteases-like 8071556 4002263 SCOP2 (2022-06-29)
Q [auth I]SCOP2 SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
S [auth K]PGM_PMM_IVe3j2wK1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
T [auth L]PGM_PMM_IVe3j2wL1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
R [auth J]PGM_PMM_IVe3j2wJ1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
Q [auth I]SNasee3j2wI1 A: alpha bundlesX: LidAH: LidAT: LidAF: SNaseECOD (develop294)
I [auth E]Gp10_Ce3j2wE1 A: alpha bundlesX: gp11/gp12 receptor-binding domainH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Gp10_CECOD (develop294)
K [auth F]Kunitz_BPTIe3j2wF1 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Kunitz_BPTIECOD (develop294)
O [auth H]Kunitz_BPTIe3j2wH1 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Kunitz_BPTIECOD (develop294)
M [auth G]Kunitz_BPTIe3j2wG1 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: Kunitz_BPTIECOD (develop294)
H [auth P]PGM_PMM_IVe3j2wP1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
D [auth N]PGM_PMM_IVe3j2wN1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
F [auth O]PGM_PMM_IVe3j2wO1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: PGM_PMM_IVECOD (develop294)
B [auth M]SNasee3j2wM1 A: alpha bundlesX: Long alpha-hairpinH: C-terminal UvrC-binding domain of UvrBT: C-terminal UvrC-binding domain of UvrBF: SNaseECOD (develop294)
ASNasee3j2wA1 A: alpha bundlesX: LidAH: LidAT: LidAF: SNaseECOD (develop294)
E [auth C]Alpha_E1_glycope3j2wC1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: Alpha_E1_glycopECOD (develop294)
G [auth D]Alpha_E1_glycope3j2wD1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: Alpha_E1_glycopECOD (develop294)
C [auth B]Alpha_E1_glycope3j2wB1 A: alpha bundlesX: all-alpha NTP pyrophosphatasesH: all-alpha NTP pyrophosphatasesT: MazG-relatedF: Alpha_E1_glycopECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
Capsid protein
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
Glycoprotein E2
I [auth E],
K [auth F],
M [auth G],
O [auth H]
Glycoprotein E1
H [auth P]Glycoprotein E2
B [auth M],
D [auth N],
F [auth O]
Glycoprotein E2
A,
C [auth B],
E [auth C],
G [auth D]
Glycoprotein E1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR002533Alphavirus E3 spike glycoproteinDomain
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR014756Immunoglobulin E-setHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR009003Peptidase S1, PA clanHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR000936Alphavirus E2 glycoproteinFamily
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR000930Peptidase S3, togavirinDomain
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR002548Alphavirus E1 glycoproteinDomain
Q [auth I],
R [auth J],
S [auth K],
T [auth L]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR002533Alphavirus E3 spike glycoproteinDomain
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR014756Immunoglobulin E-setHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR009003Peptidase S1, PA clanHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR000936Alphavirus E2 glycoproteinFamily
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR000930Peptidase S3, togavirinDomain
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR002548Alphavirus E1 glycoproteinDomain
J [auth Q],
L [auth R],
N [auth S],
P [auth T]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR002533Alphavirus E3 spike glycoproteinDomain
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR014756Immunoglobulin E-setHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR009003Peptidase S1, PA clanHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR000936Alphavirus E2 glycoproteinFamily
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR000930Peptidase S3, togavirinDomain
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR002548Alphavirus E1 glycoproteinDomain
I [auth E],
K [auth F],
M [auth G],
O [auth H]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
H [auth P]IPR002533Alphavirus E3 spike glycoproteinDomain
H [auth P]IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
H [auth P]IPR014756Immunoglobulin E-setHomologous Superfamily
H [auth P]IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
H [auth P]IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
H [auth P]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
H [auth P]IPR009003Peptidase S1, PA clanHomologous Superfamily
H [auth P]IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
H [auth P]IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
H [auth P]IPR000936Alphavirus E2 glycoproteinFamily
H [auth P]IPR000930Peptidase S3, togavirinDomain
H [auth P]IPR002548Alphavirus E1 glycoproteinDomain
H [auth P]IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR002533Alphavirus E3 spike glycoproteinDomain
B [auth M],
D [auth N],
F [auth O]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR014756Immunoglobulin E-setHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth M],
D [auth N],
F [auth O]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B [auth M],
D [auth N],
F [auth O]
IPR000936Alphavirus E2 glycoproteinFamily
B [auth M],
D [auth N],
F [auth O]
IPR000930Peptidase S3, togavirinDomain
B [auth M],
D [auth N],
F [auth O]
IPR002548Alphavirus E1 glycoproteinDomain
B [auth M],
D [auth N],
F [auth O]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR002533Alphavirus E3 spike glycoproteinDomain
A,
C [auth B],
E [auth C],
G [auth D]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR014756Immunoglobulin E-setHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A,
C [auth B],
E [auth C],
G [auth D]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR000936Alphavirus E2 glycoproteinFamily
A,
C [auth B],
E [auth C],
G [auth D]
IPR000930Peptidase S3, togavirinDomain
A,
C [auth B],
E [auth C],
G [auth D]
IPR002548Alphavirus E1 glycoproteinDomain
A,
C [auth B],
E [auth C],
G [auth D]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily