3KS8 | pdb_00003ks8

Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth D]	d3ks8d_	Alpha and beta proteins (a+b)	Filoviridae VP35-like	Filoviridae VP35-like	Filoviridae VP35	Filoviridae VP35	REBOV (Reston ebolavirus - Reston ) [TaxId: 129003 ],	SCOPe (2.08)
E [auth C]	d3ks8c_	Alpha and beta proteins (a+b)	Filoviridae VP35-like	Filoviridae VP35-like	Filoviridae VP35	Filoviridae VP35	REBOV (Reston ebolavirus - Reston ) [TaxId: 129003 ],	SCOPe (2.08)
D [auth B]	d3ks8b_	Alpha and beta proteins (a+b)	Filoviridae VP35-like	Filoviridae VP35-like	Filoviridae VP35	Filoviridae VP35	REBOV (Reston ebolavirus - Reston ) [TaxId: 129003 ],	SCOPe (2.08)
C [auth A]	d3ks8a_	Alpha and beta proteins (a+b)	Filoviridae VP35-like	Filoviridae VP35-like	Filoviridae VP35	Filoviridae VP35	REBOV (Reston ebolavirus - Reston ) [TaxId: 129003 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth D]	SCOP2B Superfamily	Ebola VP35 IID-like	8092334	3002590	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Ebola VP35 IID-like	8092334	3002590	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Ebola VP35 IID-like	8092334	3002590	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Ebola VP35 IID-like	8092334	3002590	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	COesterase, BD-FAE	e3ks8D1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (develop294)
E [auth C]	COesterase, BD-FAE	e3ks8C1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (develop294)
D [auth B]	COesterase, BD-FAE	e3ks8B1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (develop294)
C [auth A]	COesterase, BD-FAE	e3ks8A1	A: alpha bundles	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: COesterase, BD-FAE	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth D]	1.10.8.950	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
F [auth D]	2.10.10.70	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain	CATH (4.3.0)
E [auth C]	1.10.8.950	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
E [auth C]	2.10.10.70	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain	CATH (4.3.0)
D [auth B]	1.10.8.950	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
D [auth B]	2.10.10.70	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain	CATH (4.3.0)
C [auth A]	1.10.8.950	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C [auth A]	2.10.10.70	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E]	5'-R(APGPAPAPGPGPAPGPGPGPAPGPGPGPAPGPGPA)-3'	-	-	-
B [auth F]	5'-R(UPCPCPUPCPCPCPUPCPCPCPUPCPCPUPUPCPU)-3'	-	-	-
C [auth A], D [auth B], E [auth C], F [auth D]	Polymerase cofactor VP35	RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IKBKE activity symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF7 activity symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity symbiont-mediated suppression of host toll-like receptor signaling pathway	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B], E [auth C], F [auth D]	IPR031163	Filoviruses VP35 interferon inhibitory domain	Domain
C [auth A], D [auth B], E [auth C], F [auth D]	IPR043061	Filoviruses VP35 interferon inhibitory domain, beta-sheet subdomain	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D]	IPR002953	Filoviridae VP35 protein	Family
C [auth A], D [auth B], E [auth C], F [auth D]	IPR043060	Filoviruses VP35 interferon inhibitory domain, helical subdomain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.