Crystal structure of ABC-type sugar transport system, periplasmic component from Hahella chejuensis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d3ksmb1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | automated matches | automated matches | (Hahella chejuensis KCTC 2396 ) [TaxId: 349521 ], | SCOPe (2.08) |
| B | d3ksmb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Hahella chejuensis KCTC 2396 ) [TaxId: 349521 ], | SCOPe (2.08) |
| A | d3ksma1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | automated matches | automated matches | (Hahella chejuensis KCTC 2396 ) [TaxId: 349521 ], | SCOPe (2.08) |
| A | d3ksma2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Hahella chejuensis KCTC 2396 ) [TaxId: 349521 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | ALO | e3ksmB2 | A: a/b three-layered sandwiches | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: ALO | ECOD (v294.1) |
| A | ALO | e3ksmA2 | A: a/b three-layered sandwiches | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: ALO | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
| A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13407 | Periplasmic binding protein domain (Peripla_BP_4) | Periplasmic binding protein domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| ABC-type sugar transport system, periplasmic component |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR025997 | Periplasmic binding protein | Domain | |
| IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily |
