3MGJ | pdb_00003mgj

Crystal structure of the Saccharop_dh_N domain of MJ1480 protein from Methanococcus jannaschii. Northeast Structural Genomics Consortium Target MjR83a.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ACT-like	8091568	3000006	SCOP2B (2022-06-29)
A	SCOP2 Family	MJ1480-like	8045960	4007746	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ACT-like	8091568	3000006	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UVR	e3mgjB1	A: alpha bundles	X: Long alpha-hairpin	H: C-terminal UvrC-binding domain of UvrB	T: C-terminal UvrC-binding domain of UvrB	F: UVR	ECOD (develop294)
A	Transketolase_C_1	e3mgjA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Metalloproteases (zincins) catalytic domain	T: Metalloproteases (zincins) catalytic domain	F: Transketolase_C_1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.70.2690	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	LOR/SDH bifunctional enzyme, conserved domain	CATH (4.3.0)
A	3.30.70.2690	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	LOR/SDH bifunctional enzyme, conserved domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04455	LOR/SDH bifunctional enzyme conserved region (Saccharop_dh_N)	LOR/SDH bifunctional enzyme conserved region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Uncharacterized protein MJ1480	ornithine cyclodeaminase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048964	Arginine dihydrolase ArgZ/ArgE-like, C-terminal, first subdomain	Domain
A, B	IPR005239	Bifunctional arginine dihydrolase/ornithine cyclodeaminase ArgZ/ArgE-like	Family
A, B	IPR048963	Arginine dihydrolase ArgZ/ArgE-like, C-terminal, second subdomain	Domain
A, B	IPR007545	LOR/SDH bifunctional enzyme, conserved domain	Domain
A, B	IPR029035	DHS-like NAD/FAD-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.