3NMI | pdb_00003nmi

Crystal structure of the phenanthroline-modified cytochrome cb562 variant, MBP-Phen2

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd3nmif_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ed3nmie_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd3nmid_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd3nmic_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd3nmib_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad3nmia_ All alpha proteins Four-helical up-and-down bundle Cytochromes Cytochrome b562 Cytochrome b562 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochromes 8057879 3001526 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FFAD_binding_4e3nmiF1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)
EFAD_binding_4e3nmiE1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)
DFAD_binding_4e3nmiD1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)
CFAD_binding_4e3nmiC1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)
BFAD_binding_4e3nmiB1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)
AFAD_binding_4e3nmiA1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: FAD_binding_4ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)
E1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)
D1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)
C1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)
B1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)
A1.20.120.10 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Cytochrome c/b562CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Soluble cytochrome b562

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR010980Cytochrome c/b562Homologous Superfamily
A, B, C, D, E
IPR009155Cytochrome b562Family