3OCF | pdb_00003ocf

Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyL-aspartase-like 8072375 3001572 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyL-aspartase-like 8072375 3001572 SCOP2B (2022-06-29)
CSCOP2 FamilyL-aspartase/fumarase 8072374 4001433 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyL-aspartase-like 8072375 3001572 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyL-aspartase-like 8072375 3001572 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACellulasee3ocfA1 A: alpha bundlesX: Globin-likeH: Globin-likeT: Globin-likeF: CellulaseECOD (develop294)
BFer4_13e3ocfB4 A: alpha bundlesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Fer4_13ECOD (develop294)
CSdh_cyte3ocfC1 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: Sdh_cytECOD (develop294)
DFer4_13e3ocfD4 A: alpha bundlesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Fer4_13ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00206Lyase (Lyase_1)LyaseDomain
A, B, C, D
PF10415Fumarase C C-terminus (FumaraseC_C)Fumarase C C-terminusFumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The ...Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit [1]. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle.
Domain