Structure of four mutant forms of yeast F1 ATPase: alpha-F405S
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| X | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056929 | 3000684 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056928 | 3002019 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056926 | 3001034 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | ATP synthase gamma subunit-like | 8072555 | 3000451 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056893 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8056890 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8056892 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| X | e3oeeX1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| X | V-set | e3oeeX4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| W | e3oeeW1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| W | V-set | e3oeeW4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| V | e3oeeV1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| V | V-set | e3oeeV4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| O | e3oeeO1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| O | V-set | e3oeeO4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| N | e3oeeN1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| N | V-set | e3oeeN4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| M | e3oeeM1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| M | V-set | e3oeeM4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| F | e3oeeF1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| F | V-set | e3oeeF4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| E | e3oeeE1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| E | V-set | e3oeeE4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| D | e3oeeD1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| D | V-set | e3oeeD4 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| Q | e3oeeQ1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: | ECOD (develop294) | |
| H | e3oeeH1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: | ECOD (develop294) | |
| I | e3oeeI1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| Y | e3oeeY1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| P | e3oeeP1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| G | tRNA_anti-codon | e3oeeG1 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: tRNA_anti-codon | ECOD (develop294) |
| U | e3oeeU1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| T | e3oeeT1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| S | e3oeeS1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| L | e3oeeL1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| K | e3oeeK1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| J | e3oeeJ1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| C | e3oeeC1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| B | e3oeeB1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) | |
| A | e3oeeA1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF21334 | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain (ATPD_C_fung) | Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain | F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from fungi (called epsilon in bacteria or chloropla ... | Domain | |
| PF00231 | ATP synthase (ATP-synt) | ATP synthase | Domain | ||
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF00306 | ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C) | ATP synthase alpha/beta chain, C terminal domain | Domain | ||
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |














