3PHF | pdb_00003phf

Crystal Structure of the Epstein-Barr virus gH and gL complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
BA [auth 2]	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
DA [auth 4]	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
FA [auth 6]	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2B (2022-06-29)
Z	SCOP2 Family	EBV envelope glycoprotein L-like	8045939	4004774	SCOP2 (2022-06-29)
Z	SCOP2 Superfamily	Interleukin 8-like chemokines	8091615	3001955	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Herpes_glycoH_C	e3phfA1	A: alpha bundles	X: C-terminal domain of envelope glycoprotein H	H: C-terminal domain of envelope glycoprotein H	T: C-terminal domain of envelope glycoprotein H	F: Herpes_glycoH_C	ECOD (develop294)
A	Herpes_glycop_H	e3phfA2	A: alpha bundles	X: gH main domain	H: gH main domain	T: gH main domain	F: Herpes_glycop_H	ECOD (develop294)
AA [auth 1]	CoV_NSP4_C	e3phf13	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
C	Herpes_glycop_H	e3phfC2	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Herpes_glycop_H	ECOD (develop294)
C	Tubulin	e3phfC3	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Tubulin	ECOD (develop294)
CA [auth 3]	CoV_NSP4_C	e3phf33	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
E	CoV_NSP4_C	e3phfE3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
EA [auth 5]	CoV_NSP4_C	e3phf53	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
G	CoV_NSP4_C	e3phfG3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
I	CoV_NSP4_C	e3phfI3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
K	CoV_NSP4_C	e3phfK3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
M	CoV_NSP4_C	e3phfM3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
O	CoV_NSP4_C	e3phfO3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
Q	CoV_NSP4_C	e3phfQ3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
S	CoV_NSP4_C	e3phfS3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
U	CoV_NSP4_C	e3phfU3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
W	CoV_NSP4_C	e3phfW3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
Y	CoV_NSP4_C	e3phfY3	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: CoV_NSP4_C	ECOD (develop294)
B	p450	e3phfB1	A: alpha bundles	X: gH main domain	H: gH main domain	T: gH main domain	F: p450	ECOD (develop294)
BA [auth 2]	Tae4	e3phf21	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
D	Tae4	e3phfD1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
DA [auth 4]	Tae4	e3phf41	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
F	Tae4	e3phfF1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
FA [auth 6]	Tae4	e3phf61	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
H	Tae4	e3phfH1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
J	Tae4	e3phfJ1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
L	Tae4	e3phfL1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
N	Tae4	e3phfN1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
P	Tae4	e3phfP1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
R	Tae4	e3phfR1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
T	Tae4	e3phfT1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
V	Tae4	e3phfV1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
X	Tae4	e3phfX1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)
Z	Tae4	e3phfZ1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Tae4	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
AA [auth 1]	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
C	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
CA [auth 3]	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
E	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
EA [auth 5]	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
G	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
I	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
K	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
M	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
O	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
Q	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
S	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
U	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
W	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
Y	3.90.380.20	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
B	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
BA [auth 2]	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
D	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
DA [auth 4]	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
F	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
FA [auth 6]	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
H	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
J	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
L	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
N	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
P	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
R	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
T	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
V	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
X	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)
Z	3.10.390.20	Alpha Beta	Roll	SAND domain	Viral glycoprotein L	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	PF17488	Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C)	Herpesvirus glycoprotein H C-terminal domain	Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain.	Domain
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	PF02489	Herpesvirus glycoprotein H main domain (Herpes_glycop_H)	Herpesvirus glycoprotein H main domain	Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1].	Domain
B, BA [auth 2], D, DA [auth 4], F, B, BA [auth 2], D, DA [auth 4], F, FA [auth 6], H, J, L, N, P, R, T, V, X, Z	PF11108	Viral glycoprotein L (Phage_glycop_gL)	Viral glycoprotein L	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	Envelope glycoprotein H	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular membrane-bounded organelle host intracellular part host cell cytoplasm part host intracellular organelle host cell endosome membrane host cell cytoplasm host cell endosome host intracellular region
B, BA [auth 2], D, DA [auth 4], F, B, BA [auth 2], D, DA [auth 4], F, FA [auth 6], H, J, L, N, P, R, T, V, X, Z	Envelope glycoprotein L	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular part host cell cytoplasm host cell Golgi apparatus host intracellular region virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular part host cell cytoplasm host cell Golgi apparatus host intracellular region host cell cytoplasm part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	IPR038172	Herpesvirus glycoprotein H, C-terminal domain superfamily	Homologous Superfamily
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	IPR003493	Herpesvirus glycoprotein H	Family
A, AA [auth 1], C, CA [auth 3], E, A, AA [auth 1], C, CA [auth 3], E, EA [auth 5], G, I, K, M, O, Q, S, U, W, Y	IPR035305	Herpesvirus glycoprotein H, C-terminal	Domain
B, BA [auth 2], D, DA [auth 4], F, B, BA [auth 2], D, DA [auth 4], F, FA [auth 6], H, J, L, N, P, R, T, V, X, Z	IPR034708	Envelope glycoprotein L	Family
B, BA [auth 2], D, DA [auth 4], F, B, BA [auth 2], D, DA [auth 4], F, FA [auth 6], H, J, L, N, P, R, T, V, X, Z	IPR038313	Herpesvirus glycoprotein L, rhadinovirus-type superfamily	Homologous Superfamily
B, BA [auth 2], D, DA [auth 4], F, B, BA [auth 2], D, DA [auth 4], F, FA [auth 6], H, J, L, N, P, R, T, V, X, Z	IPR020175	Herpesvirus glycoprotein L, rhadinovirus-type	Family