3Q16 | pdb_00003q16

Linkage between the Bacterial Acid Stress and Stringent Responses: The Structure of the Inducible Lysine Decarboxylase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BAAAe3q16B3 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: AAAECOD (develop294)
BResponse_rege3q16B5 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Response_regECOD (develop294)
CAAAe3q16C3 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: AAAECOD (develop294)
CResponse_rege3q16C5 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Response_regECOD (develop294)
EAAAe3q16E3 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: AAAECOD (develop294)
EResponse_rege3q16E5 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Response_regECOD (develop294)
DAAAe3q16D3 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: AAAECOD (develop294)
DResponse_rege3q16D5 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Response_regECOD (develop294)
AAAAe3q16A3 A: alpha bundlesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: AAAECOD (develop294)
AResponse_rege3q16A5 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: Response_regECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF03709Orn/Lys/Arg decarboxylase, N-terminal domain (OKR_DC_1_N)Orn/Lys/Arg decarboxylase, N-terminal domainThis domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Domain
A, B, C, D, E
PF01276Orn/Lys/Arg decarboxylase, major domain (OKR_DC_1)Orn/Lys/Arg decarboxylase, major domainDomain
A, B, C, D, E
PF03711Orn/Lys/Arg decarboxylase, C-terminal domain (OKR_DC_1_C)Orn/Lys/Arg decarboxylase, C-terminal domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D, E
LLP Parent Component: LYS

RESIDAA0119

PSI-MOD :  N6-pyridoxal phosphate-L-lysine MOD:00128