3R25 | pdb_00003r25

Crystal structure of enolase superfamily member from Vibrionales bacterium complexed with Mg and Glycerol in the active site

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3r25a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Ad3r25a1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Ad3r25a3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Bd3r25b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Bd3r25b1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Bd3r25b3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Cd3r25c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Cd3r25c1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Cd3r25c3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Dd3r25d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Dd3r25d1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Dd3r25d3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Ed3r25e2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Ed3r25e1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Ed3r25e3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Fd3r25f2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Fd3r25f1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Fd3r25f3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Gd3r25g2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Gd3r25g1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Gd3r25g3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Hd3r25h2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Enolase C-terminal domain-like D-glucarate dehydratase-like automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Hd3r25h1 Alpha and beta proteins (a+b) Enolase N-terminal domain-like Enolase N-terminal domain-like automated matches automated matches (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)
Hd3r25h3 Artifacts Tags Tags Tags N-terminal Tags (Vibrionales bacterium SWAT-3 ) [TaxId: 391574 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae3r25A1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: TED_complementF:ECOD (20:10:01)
Be3r25B3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
Ce3r25C3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
De3r25D3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
Ee3r25E3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
Fe3r25F3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
Ge3r25G3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)
He3r25H3 A: Fusion glycoprotein F2X: Fusion glycoprotein F2H: Fusion glycoprotein F2T: AHSA1F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
A3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
B3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
B3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
C3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
C3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
D3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
D3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
E3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
E3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
F3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
F3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
G3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
G3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)
H3.30.390.10 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (4.3.0)
H3.20.20.120 Alpha Beta Alpha-Beta Barrel TIM Barrel Enolase-like C-terminal domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
mandelate racemase / muconate lactonizing enzyme -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR034589D-mannonate dehydratase-likeFamily
A, B, C, D, E
IPR034593D-galactonate dehydratase DgoD-likeFamily
A, B, C, D, E
IPR029065Enolase_C-likeUnknown
A, B, C, D, E
IPR018110Mandelate racemase/muconate lactonizing enzyme, conserved siteConserved Site
A, B, C, D, E
IPR013342Mandelate racemase, C-terminal domainDomain
A, B, C, D, E
IPR029017Enolase-like, N-terminalHomologous Superfamily
A, B, C, D, E
IPR036849Enolase-like, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR013341Mandelate racemase, N-terminal domainDomain