3TNL
1.45 Angstrom Crystal Structure of Shikimate 5-dehydrogenase from Listeria monocytogenes in Complex with Shikimate and NAD.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Shikimate 5-dehydrogenase (AroE)-like | 8074725 | 4000101 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MtdA-like | 8074726 | 3000046 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | MtdA-like | 8074726 | 3000046 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MtdA-like | 8074726 | 3000046 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MtdA-like | 8074726 | 3000046 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Shikimate_DH | e3tnlA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
A | Shikimate_dh_N | e3tnlA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
B | Shikimate_DH | e3tnlB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
B | Shikimate_dh_N | e3tnlB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
C | Shikimate_DH | e3tnlC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
C | Shikimate_dh_N | e3tnlC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
D | Shikimate_DH | e3tnlD1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Shikimate_DH | ECOD (1.6) |
D | Shikimate_dh_N | e3tnlD2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Aminoacid dehydrogenase-like, N-terminal domain | F: Shikimate_dh_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
C | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
C | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
D | 3.40.50.10860 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Leucine Dehydrogenase, chain A, domain 1 | CATH (4.3.0) |
D | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08501 | Shikimate dehydrogenase substrate binding domain (Shikimate_dh_N) | Shikimate dehydrogenase substrate binding domain | This domain is the substrate binding domain of shikimate dehydrogenase [1]. | Domain | |
PF18317 | Shikimate 5'-dehydrogenase C-terminal domain (SDH_C) | Shikimate 5'-dehydrogenase C-terminal domain | This domain is found in the C-terminal region of Shikimate 5'-dehydrogenase (SDH) present in Methanocaldococcus jannaschii. SDH catalyses the NADPH-dependent reduction of 3-dehydroshikimate to shikimate in the shikimate pathway. The domain is found j ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR046346 | Aminoacid dehydrogenase-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR022893 | Shikimate dehydrogenase family | Family | |
IPR011342 | Shikimate dehydrogenase | Family | |
IPR041121 | SDH, C-terminal | Domain | |
IPR013708 | Shikimate dehydrogenase substrate binding, N-terminal | Domain |