3TRE
Structure of a translation elongation factor P (efp) from Coxiella burnetii
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3trea1 | All beta proteins | SH3-like barrel | Translation proteins SH3-like domain | automated matches | automated matches | (Coxiella burnetii ) [TaxId: 777 ], | SCOPe (2.08) |
A | d3trea2 | All beta proteins | OB-fold | Nucleic acid-binding proteins | automated matches | automated matches | (Coxiella burnetii ) [TaxId: 777 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EFP | e3treA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EFP | ECOD (1.6) |
A | EFP_N | e3treA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EFP_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09285 | Elongation factor P, C-terminal (Elong-fact-P_C) | Elongation factor P, C-terminal | Members of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology [1]. | Domain | |
PF01132 | Elongation factor P (EF-P) OB domain (EFP) | Elongation factor P (EF-P) OB domain | - | Domain | |
PF08207 | Elongation factor P (EF-P) KOW-like domain (EFP_N) | Elongation factor P (EF-P) KOW-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Elongation factor P |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011768 | Translation elongation factor P | Family | |
IPR020599 | Translation elongation factor P/YeiP | Family | |
IPR015365 | Elongation factor P, C-terminal | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR013185 | Translation elongation factor, KOW-like | Domain | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR013852 | Translation elongation factor P/YeiP, conserved site | Conserved Site | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR001059 | Translation elongation factor P/YeiP, central | Domain |