3VQ1
Crystal structure of mouse TLR4/MD-2/lipid IVa complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth B] | LRR_8_3 | e3vq1B2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_3 | ECOD (1.6) |
C [auth B] | LRR_8_1 | e3vq1B1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
A | LRR_8_1 | e3vq1A4 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
A | LRR_8 | e3vq1A3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8 | ECOD (1.6) |
B [auth C] | E1_DerP2_DerF2 | e3vq1C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: E1_DerP2_DerF2 | ECOD (1.6) |
D | E1_DerP2_DerF2 | e3vq1D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: E1_DerP2_DerF2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth B] | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
B [auth C] | 2.60.40.770 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
D | 2.60.40.770 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF13855 | Leucine rich repeat (LRR_8) | Leucine rich repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR035897 | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR000483 | Cysteine-rich flanking region, C-terminal | Domain |
A, C [auth B] | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | Domain |
A, C [auth B] | IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR001611 | Leucine-rich repeat | Repeat |
A, C [auth B] | IPR017241 | Toll-like receptor | Family |
A, C [auth B] | IPR003591 | Leucine-rich repeat, typical subtype | Repeat |
B [auth C], D | IPR003172 | MD-2-related lipid-recognition domain | Domain |
B [auth C], D | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
B [auth C], D | IPR039217 | Lymphocyte antigen 96 | Family |