3VST
The complex structure of XylC with Tris
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Glyco_hydro_120_ins | e3vstA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: beta-xylosidase (XylC) insertion domain (From Topology) | T: beta-xylosidase (XylC) insertion domain | F: Glyco_hydro_120_ins | ECOD (1.6) |
A | Glyco_hydro_120 | e3vstA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_120 | ECOD (1.6) |
B | Glyco_hydro_120_ins | e3vstB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: beta-xylosidase (XylC) insertion domain (From Topology) | T: beta-xylosidase (XylC) insertion domain | F: Glyco_hydro_120_ins | ECOD (1.6) |
B | Glyco_hydro_120 | e3vstB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_120 | ECOD (1.6) |
C | Glyco_hydro_120_ins | e3vstC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: beta-xylosidase (XylC) insertion domain (From Topology) | T: beta-xylosidase (XylC) insertion domain | F: Glyco_hydro_120_ins | ECOD (1.6) |
C | Glyco_hydro_120 | e3vstC2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_120 | ECOD (1.6) |
D | Glyco_hydro_120_ins | e3vstD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: beta-xylosidase (XylC) insertion domain (From Topology) | T: beta-xylosidase (XylC) insertion domain | F: Glyco_hydro_120_ins | ECOD (1.6) |
D | Glyco_hydro_120 | e3vstD1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_120 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
B | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
C | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
C | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
D | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
D | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13229 | Right handed beta helix region (Beta_helix) | Right handed beta helix region | - | Repeat | |
PF21258 | Glycoside hydrolase 120, insertion domain (Glyco_hydro_120_ins) | Glycoside hydrolase 120, insertion domain | This insertion domain is found in a group of bacterial glycoside hydrolases from the CAZy family 120, including Parallel beta-helix repeat protein from Thermoanaerobacterium saccharolyticum (also known as xylosidase). It is often found associated to ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Xylosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006626 | Parallel beta-helix repeat | Repeat | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR052052 | Polysaccharide Lyase 9 | Family | |
IPR039448 | Right handed beta helix domain | Domain | |
IPR049169 | Glycoside hydrolase 120, insertion domain | Domain | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |