The complex structure of XylC with Tris
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e3vstA1 | A: Fic-like | X: Pectin lyase-like | H: Pectin lyase-like | T: Beta_helix | F: | ECOD (20:10:01) | |
| A | e3vstA2 | A: Fic-like | X: Fic-like | H: Fic-like | T: Glyco_hydro_120_ins | F: | ECOD (20:10:01) | |
| B | e3vstB1 | A: MocoBD/DmpA-related | X: MocoBD/DmpA-related | H: Retrovirus capsid protein-C | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| C | e3vstC1 | A: MocoBD/DmpA-related | X: MocoBD/DmpA-related | H: Retrovirus capsid protein-C | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| D | e3vstD1 | A: MocoBD/DmpA-related | X: MocoBD/DmpA-related | H: Retrovirus capsid protein-C | T: Ldh_1_C | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
| A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
| B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
| B | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
| C | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
| C | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
| D | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
| D | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Xylosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006626 | Parallel beta-helix repeat | Repeat | |
| IPR012334 | Pectin lyase fold | Homologous Superfamily | |
| IPR052052 | Polysaccharide Lyase 9 | Family | |
| IPR039448 | Right handed beta helix domain | Domain | |
| IPR049169 | Glycoside hydrolase 120, insertion domain | Domain | |
| IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
| IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |
