3VVK | pdb_00003vvk

An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd3vvkf_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)
Ed3vvke_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)
Dd3vvkd_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)
Cd3vvkc_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)
Bd3vvkb_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)
Ad3vvka_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Natronomonas pharaonis ) [TaxId: 2257 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2B (2022-06-29)
BSCOP2 FamilyBacteriorhodopsin-like 8071317 4001859 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyG protein-coupled receptor-like 8071318 3000473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Fe3vvkF1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)
Ee3vvkE1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)
De3vvkD1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)
Ce3vvkC1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)
Be3vvkB1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)
Ae3vvkA1 A: PBZ domainX: PBZ domainH: PBZ domainT: Choline_kinase, EcKLF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
E1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
D1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
C1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
B1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)
A1.20.1070.10 Mainly Alpha Up-down Bundle Rhopdopsin 7-helix transmembrane proteins Rhodopsin 7-helix transmembrane proteinsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Halorhodopsin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR018229Rhodopsin, retinal binding siteBinding Site
A, B, C, D, E
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicRhodopsin-like receptors and pumpsMicrobial and algal rhodopsins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD