3ZOW | pdb_00003zow

Crystal Structure of Wild Type Nitrosomonas europaea Cytochrome c552

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
R	d3zowr_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
Q	d3zowq_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
P	d3zowp_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
O	d3zowo_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
N	d3zown_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
M	d3zowm_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
L	d3zowl_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
K	d3zowk_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
J	d3zowj_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
I	d3zowi_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
H	d3zowh_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
G	d3zowg_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
F	d3zowf_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
E	d3zowe_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
D	d3zowd_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
C	d3zowc_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d3zowb_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
A	d3zowa_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R	PBP	e3zowR1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
Q	PBP	e3zowQ1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
P	PBP	e3zowP1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
O	PBP	e3zowO1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
N	PBP	e3zowN1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
M	PBP	e3zowM1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
L	PBP	e3zowL1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
K	PBP	e3zowK1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
J	PBP	e3zowJ1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
I	PBP	e3zowI1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
H	PBP	e3zowH1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
G	PBP	e3zowG1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
F	PBP	e3zowF1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
E	PBP	e3zowE1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
D	PBP	e3zowD1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
C	PBP	e3zowC1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
B	PBP	e3zowB1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)
A	PBP	e3zowA1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: EGF-related	T: Complement control module/SCR domain	F: PBP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
R	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
Q	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
P	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
O	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
N	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
M	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
L	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
K	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
J	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
I	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
H	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
G	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
F	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
E	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
D	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	CYTOCHROME C-552	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR009056	Cytochrome c-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR002324	Cytochrome c, class ID	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.