Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyADC-like 8032511 3001132 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyADC-like 8032511 3001132 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyADC-like 8032511 3001132 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyADC-like 8032511 3001132 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACDC48_Ne3cf2A8 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
ACDC48e3cf2A7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
AVps4_C_Ce3cf2A6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
ACDC48_2e3cf2A4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
ASigma54_activate3cf2A5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
BCDC48_Ne3cf2B8 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
BCDC48e3cf2B7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
BVps4_C_Ce3cf2B6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
BCDC48_2e3cf2B4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
BSigma54_activate3cf2B5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
CCDC48_Ne3cf2C8 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
CCDC48e3cf2C7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
CVps4_C_Ce3cf2C6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
CCDC48_2e3cf2C4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
CSigma54_activate3cf2C5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
DCDC48_Ne3cf2D8 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
DCDC48e3cf2D7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
DVps4_C_Ce3cf2D6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
DCDC48_2e3cf2D4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
DSigma54_activate3cf2D5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
A3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
A6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (4.3.0)
B2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
B3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
B6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (4.3.0)
C2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
C3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
C1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
C6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (4.3.0)
D2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
D3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
D1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
D6.10.20.150 Special Helix non-globular Arc Repressor Mutant, subunit A CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A, B, C, D
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.Domain
A, B, C, D
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
A, B, C, D
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Transitional endoplasmic reticulum ATPase