4AKD | pdb_00004akd

High resolution structure of Mannose Binding lectin from Champedak (CMB)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4akdd1	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	automated matches	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
D	d4akdd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
C	d4akdc1	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	automated matches	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
C	d4akdc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
B	d4akdb1	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	automated matches	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
B	d4akdb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
A	d4akda1	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	automated matches	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
A	d4akda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SmpA_OmlA	e4akdD1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (develop294)
C	SmpA_OmlA	e4akdC1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (develop294)
B	SmpA_OmlA	e4akdB1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: SmpA_OmlA	ECOD (develop294)
A	C1-set	e4akdA1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: C1-set	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
C	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
B	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
A	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	MANNOSE-SPECIFIC LECTIN KM+	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding D-glucose binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036404	Jacalin-like lectin domain superfamily	Homologous Superfamily
A, B, C, D	IPR033734	Jacalin-like lectin domain, plant	Domain
A, B, C, D	IPR001229	Jacalin-like lectin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.