4AM1

Crystal structure of the marine crustacean decapod shrimp (Litopenaeus vannamei) arginine kinase in the absence of substrate or ligands.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4am1a1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)
A	d4am1a2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)
A	d4am1a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ATP-gua_PtransN	e4am1A1	A: alpha arrays	X: Guanido kinase-N (From Topology)	H: Guanido kinase-N (From Topology)	T: Guanido kinase-N	F: ATP-gua_PtransN	ECOD (1.6)
A	ATP-gua_Ptrans	e4am1A2	A: a+b two layers	X: Glutamine synthetase-like	H: Glutamine synthetase/guanido kinase (From Topology)	T: Glutamine synthetase/guanido kinase	F: ATP-gua_Ptrans	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
A	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain (ATP-gua_Ptrans)	ATP:guanido phosphotransferase, C-terminal catalytic domain	The substrate binding site is located in the cleft between N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain.	Domain
A	PF02807	ATP:guanido phosphotransferase, N-terminal domain (ATP-gua_PtransN)	ATP:guanido phosphotransferase, N-terminal domain	The N-terminal domain has an all-alpha fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	ARGININE KINASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding creatine kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, nitrogenous group as acceptor transferase activity, transferring phosphorus-containing groups amino acid kinase activity arginine kinase activity cation binding organic acid binding amino acid binding carboxylic acid binding arginine binding	phosphocreatine metabolic process phosphagen metabolic process phosphocreatine biosynthetic process cellular metabolic process cellular modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process cellular modified amino acid biosynthetic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process phosphocreatine metabolic process phosphagen metabolic process phosphocreatine biosynthetic process cellular metabolic process cellular modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process cellular modified amino acid biosynthetic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine deoxyribonucleoside diphosphate metabolic process pyrimidine nucleoside diphosphate metabolic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process nucleobase-containing compound metabolic process deoxyribonucleotide metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process dTDP metabolic process 2'-deoxyribonucleotide metabolic process primary metabolic process nucleotide metabolic process deoxyribose phosphate metabolic process deoxyribonucleoside diphosphate metabolic process nucleoside diphosphate metabolic process phosphorylation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022413	ATP:guanido phosphotransferase, N-terminal	Domain
A	IPR022414	ATP:guanido phosphotransferase, catalytic domain	Domain
A	IPR036802	ATP:guanido phosphotransferase, N-terminal domain superfamily	Homologous Superfamily
A	IPR000749	ATP:guanido phosphotransferase	Family
A	IPR022415	ATP:guanido phosphotransferase active site	Active Site
A	IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.