4AV2 | pdb_00004av2

Single particle electron microscopy of PilQ dodecameric complexes from Neisseria meningitidis.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
U	SCOP2 Family	PilP-like	8045780	4004682	SCOP2 (2022-06-29)
U	SCOP2 Superfamily	PilP-like	8091780	3002541	SCOP2 (2022-06-29)
T	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	PilP-like	8091780	3002541	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	AMIN domain-like	8092186	3002568	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Neur	e4av2X1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
W	Neur	e4av2W1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
V	Neur	e4av2V1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
U	Neur	e4av2U1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
T	Neur	e4av2T1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
S	Neur	e4av2S1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
R	Neur	e4av2R1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
Q	Neur	e4av2Q1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
P	Neur	e4av2P1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
O	Neur	e4av2O1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
N	Neur	e4av2N1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Ribonuclease H-like	F: Neur	ECOD (develop294)
M	DUF4488	e4av2M1	A: alpha bundles	X: Lipocalins/Streptavidin	H: hypothetical protein BACOVA_00364	T: hypothetical protein BACOVA_00364	F: DUF4488	ECOD (develop294)
L	SLT_beta	e4av2L1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
K	SLT_beta	e4av2K1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
J	SLT_beta	e4av2J1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
I	SLT_beta	e4av2I1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
H	SLT_beta	e4av2H1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
G	SLT_beta	e4av2G1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
F	SLT_beta	e4av2F1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
E	SLT_beta	e4av2E1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
D	SLT_beta	e4av2D1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
C	SLT_beta	e4av2C1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
B	SLT_beta	e4av2B1	A: alpha bundles	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (develop294)
A	AMIN	e4av2A1	A: alpha bundles	X: Suppressor of Fused, N-terminal domain	H: Suppressor of Fused, N-terminal domain	T: Suppressor of Fused, N-terminal domain	F: AMIN	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07660	Secretin and TonB N terminus short domain (STN)	Secretin and TonB N terminus short domain	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF03958	Bacterial type II/III secretion system short domain (Secretin_N)	Bacterial type II/III secretion system short domain	This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF11741	AMIN domain (AMIN)	AMIN domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	PILP PROTEIN	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	TYPE IV PILUS BIOGENESIS AND COMPETENCE PROTEIN PILQ	-	DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region DNA-mediated transformation cellular response to stimulus horizontal gene transfer response to stimulus establishment of competence for transformation cellular process establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR007446	Type IV pilus inner membrane component PilP	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005644	NolW-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR038591	NolW-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011662	Secretin/TonB, short N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001775	GspD/PilQ family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004845	Type II secretion system protein GspD, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR021731	AMIN domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR051808	Type IV pilus biogenesis and competence protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013355	Type IV pilus secretin PilQ	Family