4BG4 | pdb_00004bg4

Crystal structure of Litopenaeus vannamei arginine kinase in a ternary analog complex with arginine, ADP-Mg and NO3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4bg4b1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)
B	d4bg4b2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)
A	d4bg4a1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)
A	d4bg4a2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	(Penaeus vannamei ) [TaxId: 6689 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Tubulin	e4bg4B1	A: alpha bundles	X: PRTase-like	H: PRTase-like	T: PRTase-like	F: Tubulin	ECOD (develop294)
A	Tubulin	e4bg4A1	A: alpha bundles	X: PRTase-like	H: PRTase-like	T: PRTase-like	F: Tubulin	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
B	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
A	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
A	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	ARGININE KINASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding creatine kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, nitrogenous group as acceptor transferase activity, transferring phosphorus-containing groups amino acid kinase activity arginine kinase activity cation binding organic acid binding amino acid binding carboxylic acid binding arginine binding	phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine deoxyribonucleoside diphosphate metabolic process pyrimidine nucleoside diphosphate metabolic process dTDP metabolic process 2'-deoxyribonucleotide metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process pyrimidine nucleotide metabolic process nucleobase-containing compound metabolic process nucleoside diphosphate metabolic process deoxyribonucleotide metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process	cellular anatomical structure extracellular region extracellular space
A	ARGININE KINASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding creatine kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, nitrogenous group as acceptor transferase activity, transferring phosphorus-containing groups amino acid kinase activity arginine kinase activity cation binding organic acid binding amino acid binding carboxylic acid binding arginine binding	phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine deoxyribonucleoside diphosphate metabolic process pyrimidine nucleoside diphosphate metabolic process dTDP metabolic process 2'-deoxyribonucleotide metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process pyrimidine nucleotide metabolic process nucleobase-containing compound metabolic process nucleoside diphosphate metabolic process deoxyribonucleotide metabolic process nucleobase-containing small molecule metabolic process small molecule metabolic process	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR022413	ATP:guanido phosphotransferase, N-terminal	Domain
B	IPR022414	ATP:guanido phosphotransferase, catalytic domain	Domain
B	IPR036802	ATP:guanido phosphotransferase, N-terminal domain superfamily	Homologous Superfamily
B	IPR000749	ATP:guanido phosphotransferase	Family
B	IPR022415	ATP:guanido phosphotransferase active site	Active Site
B	IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	Homologous Superfamily
A	IPR022413	ATP:guanido phosphotransferase, N-terminal	Domain
A	IPR022414	ATP:guanido phosphotransferase, catalytic domain	Domain
A	IPR036802	ATP:guanido phosphotransferase, N-terminal domain superfamily	Homologous Superfamily
A	IPR000749	ATP:guanido phosphotransferase	Family
A	IPR022415	ATP:guanido phosphotransferase active site	Active Site
A	IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210
A	CSO	Parent Component: CYS RESID: AA0205 , AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210 , L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.