4C0G | pdb_00004c0g

Structure of the NOT-box domain of human CNOT3

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2B (2022-06-29)
A	SCOP2 Family	NOT2_3_5 domain-like	8045464	4004482	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NOT2_3_5 domain-like	8090759	3002454	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	NOT2_3_5_C	e4c0gB1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: NOT2_3_5_C	ECOD (v294.1)
C	RNA_pol_I_A49	e4c0gC1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: RNA_pol_I_A49	ECOD (v294.1)
D	RNA_pol_I_A49	e4c0gD1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: RNA_pol_I_A49	ECOD (v294.1)
E	RNA_pol_I_A49	e4c0gE1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: RNA_pol_I_A49	ECOD (v294.1)
F	RNA_pol_I_A49	e4c0gF1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: RNA_pol_I_A49	ECOD (v294.1)
A	RNA_pol_I_A49	e4c0gA1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: RNA_pol_I_A49	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)
C	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)
D	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)
E	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)
F	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)
A	2.30.30.1020	Mainly Beta	Roll	SH3 type barrels.	CCR4-NOT complex subunit 2/3/5, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04153	NOT2/NOT3/NOT5 C-terminal (NOT2_3_5_C)	NOT2/NOT3/NOT5 C-terminal	NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This entry represents the C-terminal SH3-like domain of NOT2, NOT3 and NOT5, which mediate heterodimerization and NO ...	NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This entry represents the C-terminal SH3-like domain of NOT2, NOT3 and NOT5, which mediate heterodimerization and NOT-module assembly [2,3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3	-	developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation regulation of stem cell population maintenance regulation of multicellular organismal process maintenance of cell number stem cell population maintenance multicellular organism development determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation regulation of stem cell population maintenance regulation of multicellular organismal process maintenance of cell number stem cell population maintenance multicellular organism development determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry regulation of biosynthetic process regulation of cellular process negative regulation of metabolic process negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulatory ncRNA-mediated gene silencing regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process negative regulation of macromolecule metabolic process homeostatic process positive regulation of biological process adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription catabolic process macromolecule catabolic process RNA catabolic process mRNA catabolic process mRNA metabolic process nucleobase-containing compound catabolic process nucleic acid catabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression positive regulation of macromolecule metabolic process regulation of biological quality positive regulation of mRNA metabolic process nuclear-transcribed mRNA poly(A) tail shortening positive regulation of RNA metabolic process nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay mRNA destabilization regulation of mRNA catabolic process positive regulation of cellular process nuclear-transcribed mRNA catabolic process RNA destabilization regulation of catabolic process positive regulation of catabolic process regulation of mRNA stability positive regulation of mRNA catabolic process regulation of RNA stability regulation of mRNA metabolic process regulation of protein metabolic process translation protein biosynthetic process regulation of translation protein metabolic process trophectodermal cell differentiation cellular developmental process chordate embryonic development embryo development in utero embryonic development anatomical structure morphogenesis blastocyst formation embryo development ending in birth or egg hatching cell differentiation anatomical structure formation involved in morphogenesis blastocyst development	CCR4-NOT complex protein-containing complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex CCR4-NOT complex protein-containing complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle supramolecular complex P-body CCR4-NOT core complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR012270	CCR4-NOT complex, subunit 3/ 5	Family
A, B, C, D, E A, B, C, D, E, F	IPR007282	NOT2/NOT3/NOT5, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR007207	CCR4-Not complex component, Not N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038635	CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR040168	Not2/Not3/Not5	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: O75175	acute T cell leukemia Precursor T-Cell Lymphoblastic Leukemia-Lymphoma prostate cancer glioblastoma lung cancer malignant mesothelioma alcoholic liver cirrhosis intellectual disability malignant ependymoma medulloblastoma primitive neuroectodermal tumor Takayasu arteritis atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma acute T cell leukemia Precursor T-Cell Lymphoblastic Leukemia-Lymphoma prostate cancer glioblastoma lung cancer malignant mesothelioma alcoholic liver cirrhosis intellectual disability malignant ependymoma medulloblastoma primitive neuroectodermal tumor Takayasu arteritis atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.