4C5F | pdb_00004c5f

Structure of Lytic Transglycosylase MltC from Escherichia coli at 2.3 A resolution.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Lysozyme-like	8103600	3001879	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Mltc N-terminal domain-like	8103601	3002785	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Mltc N-terminal domain-like	8103601	3002785	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Lysozyme-like	8103600	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Acetyltransf_16	e4c5fB1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (develop294)
A	LON_substr_bdg	e4c5fA1	A: alpha bundles	X: Spectrin repeat-like	H: ETN0001 domain-like	T: Mss4-like	F: LON_substr_bdg	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
A	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11873	Membrane-bound lytic murein transglycosylase C, N-terminal domain (Mltc_N)	Membrane-bound lytic murein transglycosylase C, N-terminal domain	-	Family
A, B	PF01464	Transglycosylase SLT domain (SLT)	Transglycosylase SLT domain	This family is distantly related to Pfam:PF00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in [4]).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE C	peptidoglycan lytic transglycosylase activity peptidoglycan muralytic activity lytic endotransglycosylase activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity hydrolase activity, acting on glycosyl bonds hydrolase activity	cellular response to stimulus cellular response to antibiotic cellular response to chemical stimulus response to stimulus response to chemical cellular process response to antibiotic cell division cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization catabolic process cellular response to stimulus cellular response to antibiotic cellular response to chemical stimulus response to stimulus response to chemical cellular process response to antibiotic cell division cellular component organization cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization catabolic process metabolic process macromolecule metabolic process macromolecule catabolic process cell wall macromolecule catabolic process cell wall macromolecule metabolic process carbohydrate derivative catabolic process peptidoglycan catabolic process glycosaminoglycan metabolic process carbohydrate derivative metabolic process aminoglycan catabolic process glycosaminoglycan catabolic process aminoglycan metabolic process peptidoglycan metabolic process response to oxidative stress cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress	cellular anatomical structure outer membrane-bounded periplasmic space cell envelope periplasmic space cell periphery cell outer membrane external encapsulating structure membrane outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023664	Murein transglycosylase-C	Family
A, B	IPR024570	Murein transglycosylase-C, N-terminal	Domain
A, B	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily
A, B	IPR008258	Transglycosylase SLT domain 1	Domain
A, B	IPR000189	Prokaryotic transglycosylase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.