4CI8 | pdb_00004ci8

Crystal structure of the tandem atypical beta-propeller domain of EML1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4ci8A1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: WD40, HELP, Beta-prop_EML	F:	ECOD (20:10:01)
A		e4ci8A2	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: WD40, ANAPC4_WD40, Beta-prop_EML_2	F:	ECOD (20:10:01)
B		e4ci8B1	A: Outer membrane meander beta-barrels	X: Porins	H: Porin	T: Hemagglutinin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03451	HELP motif (HELP)	HELP motif	-	Repeat
A, B	PF23409	Echinoderm microtubule-associated protein first beta-propeller (Beta-prop_EML)	Echinoderm microtubule-associated protein first beta-propeller	-	Repeat
A, B	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ECHINODERM MICROTUBULE-ASSOCIATED PROTEIN-LIKE 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding	developmental process neuroblast proliferation multicellular organismal process cell population proliferation cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cellular process neural precursor cell proliferation system development developmental process neuroblast proliferation multicellular organismal process cell population proliferation cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cellular process neural precursor cell proliferation system development head development central nervous system development animal organ development brain development cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization mitotic cell cycle mitotic spindle organization mitotic cell cycle process cell cycle microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process hemopoiesis cell development hematopoietic progenitor cell differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol mitotic spindle spindle intracellular membraneless organelle intracellular organelle mitotic spindle midzone cytoskeleton organelle membraneless organelle spindle midzone microtubule cytoskeleton cellular anatomical structure intracellular anatomical structure cytoplasm cytosol mitotic spindle spindle intracellular membraneless organelle intracellular organelle mitotic spindle midzone cytoskeleton organelle membraneless organelle spindle midzone microtubule cytoskeleton perinuclear region of cytoplasm mitotic spindle pole spindle pole protein-containing complex microtubule associated complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR055439	EML-like, first beta-propeller domain	Domain
A, B	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B	IPR001680	WD40 repeat	Repeat
A, B	IPR005108	HELP motif	Conserved Site
A, B	IPR055442	EML-like, second beta-propeller domain	Domain
A, B	IPR050630	WD repeat Echinoderm Microtubule-associated Protein-like	Family
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O00423	band heterotopia of brain intellectual disability lissencephaly spectrum disorders osteosarcoma pancreatic intraductal papillary-mucinous neoplasm sinusitis ulcerative colitis acute myeloid leukemia cystic fibrosis Epileptic encephalopathy lung adenocarcinoma malignant mesothelioma myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia band heterotopia of brain intellectual disability lissencephaly spectrum disorders osteosarcoma pancreatic intraductal papillary-mucinous neoplasm sinusitis ulcerative colitis acute myeloid leukemia cystic fibrosis Epileptic encephalopathy lung adenocarcinoma malignant mesothelioma myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia spina bifida atopic eczema ductal breast carcinoma in situ heart disease invasive ductal breast carcinoma malignant colon neoplasm medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer subcortical band heterotopia epilepsy hydrocephalus malignant ependymoma myocardial infarction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.