4CSF | pdb_00004csf

Structural insights into Toscana virus RNA encapsidation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
O	SCOP2 Family	BueVN nucleocapsid protein-like	8047522	4005678	SCOP2 (2022-06-29)
O	SCOP2 Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2 (2022-06-29)
N	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	PDH_C	e4csfE1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
X	PDH_C	e4csfX1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
C	PDH_C	e4csfC1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
W	PDH_C	e4csfW1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
V	PDH_C	e4csfV1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
U	PDH_C	e4csfU1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
T	PDH_C	e4csfT1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
S	PDH_C	e4csfS1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
R	PDH_C	e4csfR1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
Q	PDH_C	e4csfQ1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
P	PDH_C	e4csfP1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
O	PDH_C	e4csfO1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
N	PDH_C	e4csfN1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
M	PDH_C	e4csfM1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
L	PDH_C	e4csfL1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
K		e4csfK1	A: alpha bundles	X: DEATH domain	H: HTH	T: winged helix domain	F:	ECOD (develop294)
J	PDH_C	e4csfJ1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
I	PDH_C	e4csfI1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
H	PDH_C	e4csfH1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
G	PDH_C	e4csfG1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
F	PDH_C	e4csfF1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
D	PDH_C	e4csfD1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
B	PDH_C	e4csfB1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)
A	PDH_C	e4csfA1	A: alpha bundles	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family
C, X	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth e], BA [auth g], CA [auth i], DA [auth k], EA [auth m], AA [auth e], BA [auth g], CA [auth i], DA [auth k], EA [auth m], FA [auth o], GA [auth q], HA [auth s], IA [auth u], JA [auth w], Y [auth a], Z [auth c]	RNA (5'-R(UPGPUPGPUPUPUPCP*UP)-3')	-	-	-
E	NUCLEOPROTEIN	RNA binding binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid
C, X	NUCLEOPROTEIN	RNA binding binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	NUCLEOPROTEIN	RNA binding binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR015971	Nucleocapsid, Phlebovirus	Family
E	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family
C, X	IPR015971	Nucleocapsid, Phlebovirus	Family
C, X	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, D, F, G A, B, D, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family