4EAL | pdb_00004eal

Co-crystal of AMPK core with ATP soaked with AMP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyCBS-domain pair 8037383 3000123 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCBS-domain pair 8037384 3000123 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CBSH_CusBe4ealC2 A: alpha bundlesX: C-terminal domain in some PLP-dependent transferasesH: C-terminal domain in some PLP-dependent transferasesT: C-terminal domain in some PLP-dependent transferasesF: BSH_CusBECOD (develop294)
CRibosomal_L1e4ealC3 A: alpha bundlesX: Glutamine synthetase-likeH: Glutamine synthetase/guanido kinaseT: Glutamine synthetase/guanido kinaseF: Ribosomal_L1ECOD (develop294)
BLRR_adjacente4ealB1 A: alpha bundlesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: LRR_adjacentECOD (develop294)
ASmpA_OmlAe4ealA1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: SmpA_OmlAECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
5'-AMP-activated protein kinase subunit gamma-1
5'-AMP-activated protein kinase subunit beta-1
5'-AMP-activated protein kinase catalytic subunit alpha-1