4EBA | pdb_00004eba

Crystal structure of the Rna14-Rna15 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Suf, HAT_PRP39_N	e4ebaA1	A: alpha bundles	X: Ribonuclease H-like	H: Ribonuclease H-like	T: Formyltransferase	F: Suf, HAT_PRP39_N	ECOD (develop294)
B	Exop_C	e4ebaB1	A: alpha bundles	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Exop_C	ECOD (develop294)
D	HEAT, IBN_N, HEAT_EZ, TPR_IMB1	e4ebaD7	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: HEAT, IBN_N, HEAT_EZ, TPR_IMB1	ECOD (develop294)
E	EXOSC1	e4ebaE1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: EXOSC1	ECOD (develop294)
F	HEAT, IBN_N, HEAT_EZ, TPR_IMB1	e4ebaF7	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: HEAT, IBN_N, HEAT_EZ, TPR_IMB1	ECOD (develop294)
C	EXOSC1	e4ebaC1	A: alpha bundles	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: EXOSC1	ECOD (develop294)
G	CSTF2_hinge	e4ebaG1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CSTF2_hinge	ECOD (develop294)
I [auth H]	GTP_EFTU_D2	e4ebaH2	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: GTP_EFTU_D2	ECOD (develop294)
H [auth I]	GTP_EFTU_D2	e4ebaI2	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: GTP_EFTU_D2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
D	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
E	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
F	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
C	1.25.40.1040	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
G	1.25.40.630	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
I [auth H]	1.25.40.630	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
H [auth I]	1.25.40.630	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF05843	Suppressor of forked protein (Suf) (Suf)	Suppressor of forked protein (Suf)	-	Repeat
G, H [auth I], I [auth H]	PF14327	Hinge domain of cleavage stimulation factor subunit 2 (CSTF2_hinge)	Hinge domain of cleavage stimulation factor subunit 2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	mRNA 3'-end-processing protein RNA14	RNA binding binding nucleic acid binding mRNA binding	mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
G, H [auth I], I [auth H]	Rna15	RNA binding binding nucleic acid binding mRNA binding	mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing mRNA 3'-end processing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle mRNA cleavage and polyadenylation specificity factor complex mRNA cleavage factor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR003107	HAT (Half-A-TPR) repeat	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR008847	Suppressor of forked	Domain
A, B, C, D, E A, B, C, D, E, F	IPR045243	mRNA 3'-end-processing protein Rna14-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
G, H [auth I], I [auth H]	IPR025742	Cleavage stimulation factor subunit 2, hinge domain	Domain
G, H [auth I], I [auth H]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
G, H [auth I], I [auth H]	IPR038192	Transcription termination and cleavage factor, C-terminal domain superfamily	Homologous Superfamily
G, H [auth I], I [auth H]	IPR000504	RNA recognition motif domain	Domain
G, H [auth I], I [auth H]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
G, H [auth I], I [auth H]	IPR026896	Transcription termination and cleavage factor, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.