4EXS
Crystal structure of NDM-1 bound to L-captopril
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d4exsb1 | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
A [auth B] | d4exsb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
B [auth A] | d4exsa1 | Alpha and beta proteins (a+b) | Metallo-hydrolase/oxidoreductase | Metallo-hydrolase/oxidoreductase | automated matches | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
B [auth A] | d4exsa2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8061883 | 3001057 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Metallo-hydrolase/oxidoreductase | 8061883 | 3001057 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Lactamase_B | e4exsB1 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
B [auth A] | Lactamase_B | e4exsA2 | A: a+b four layers | X: Metallo-hydrolase/oxidoreductase (From Topology) | H: Metallo-hydrolase/oxidoreductase (From Topology) | T: Metallo-hydrolase/oxidoreductase | F: Lactamase_B | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
B [auth A] | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
A [auth B], B [auth A] | ARO:3000589 | NDM-1 | NDM-1 is a metallo-beta-lactamase isolated from Klebsiella pneumoniae with nearly complete resistance to all beta-lactam antibiotics. | CARD (3.3.0) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B], B [auth A] | ARO:3000057 | NDM beta-lactamase | carbapenem, cephalosporin, cephamycin, penam | antibiotic inactivation | CARD (3.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF00753 | Metallo-beta-lactamase superfamily (Lactamase_B) | Metallo-beta-lactamase superfamily | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A] | Beta-lactamase NDM-1 |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily |
A [auth B], B [auth A] | IPR001279 | Metallo-beta-lactamase | Domain |
A [auth B], B [auth A] | IPR050855 | Metallo-beta-lactamase type 2-like | Family |