4GIP | pdb_00004gip

Structure of the cleavage-activated prefusion form of the parainfluenza virus 5 (PIV5) fusion protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Virus ectodomain	8039641	3001628	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Virus ectodomain	8039641	3001628	SCOP2B (2022-06-29)
B [auth D]	SCOP2B Superfamily	Virus ectodomain	8039641	3001628	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e4gipF1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Rieske	F:	ECOD (20:10:01)
D [auth E]		e4gipE1	A: Lipocalins/Streptavidin	X: SAM/DNA-glycosylase	H: SAM domain-like	T: Rieske	F:	ECOD (20:10:01)
B [auth D]		e4gipD1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: DNA_gyraseB_C,Toprim	F:	ECOD (20:10:01)
E [auth C]		e4gipC1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: FtsJ	F:	ECOD (20:10:01)
C [auth B]		e4gipB1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: FtsJ	F:	ECOD (20:10:01)
A		e4gipA1	A: Fusion glycoprotein F2	X: Fusion glycoprotein F2	H: Fusion glycoprotein F2	T: Fusion_gly	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
F	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
D [auth E]	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
D [auth E]	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
B [auth D]	2.40.490.10	Mainly Beta	Beta Barrel	Head and neck region of the ectodomain of NDV fusion glycoprotein	Newcastle disease virus like domain	CATH (4.3.0)
B [auth D]	2.60.40.1690	Mainly Beta	Sandwich	Immunoglobulin-like	Head and neck region of the ectodomain of NDV fusion glycoprotein	CATH (4.3.0)
E [auth C]	6.10.10.110	Special	Helix non-globular	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C [auth B]	6.10.10.110	Special	Helix non-globular	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	6.10.10.110	Special	Helix non-globular	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth D], D [auth E], F	PF00523	Fusion glycoprotein F0 (Fusion_gly)	Fusion glycoprotein F0	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D], D [auth E], F	Fusion glycoprotein F1	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont entry into host cell symbiont entry into host	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane
A, C [auth B], E [auth C]	Fusion glycoprotein F2	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral budding from plasma membrane viral release from host cell symbiont entry into host cell symbiont entry into host	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D], D [auth E], F	IPR000776	Precursor fusion glycoprotein F0, Paramyxoviridae	Family
A, C [auth B], E [auth C]	IPR000776	Precursor fusion glycoprotein F0, Paramyxoviridae	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.