4GNL
Structure of rat cytosolic PEPCK Ld_2g in complex with PEP and GDP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4gnla2 | Alpha and beta proteins (a/b) | PEP carboxykinase-like | PEP carboxykinase-like | PEP carboxykinase C-terminal domain | Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) | rat (Rattus norvegicus ) [TaxId: 10116 ], rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
A | d4gnla1 | Alpha and beta proteins (a/b) | PEP carboxykinase N-terminal domain | PEP carboxykinase N-terminal domain | PEP carboxykinase N-terminal domain | Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) | rat (Rattus norvegicus ) [TaxId: 10116 ], rat (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PEPCK_C | e4gnlA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: PEP carboxykinase catalytic C-terminal domain | F: PEPCK_C | ECOD (1.6) |
A | PEPCK_N | e4gnlA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: PEP carboxykinase N-terminal domain (From Topology) | T: PEP carboxykinase N-terminal domain | F: PEPCK_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.449.10 | Alpha Beta | 3-Layer(aba) Sandwich | Phosphoenolpyruvate Carboxykinase | domain 1 | CATH (4.3.0) |
A | 2.170.8.10 | Mainly Beta | Beta Complex | Phosphoenolpyruvate Carboxykinase | domain 2 | CATH (4.3.0) |
A | 3.90.228.20 | Alpha Beta | Alpha-Beta Complex | Phosphoenolpyruvate Carboxykinase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00821 | Phosphoenolpyruvate carboxykinase C-terminal P-loop domain (PEPCK_GTP) | Phosphoenolpyruvate carboxykinase C-terminal P-loop domain | Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate. | Domain | |
PF17297 | Phosphoenolpyruvate carboxykinase N-terminal domain (PEPCK_N) | Phosphoenolpyruvate carboxykinase N-terminal domain | Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008209 | Phosphoenolpyruvate carboxykinase, GTP-utilising | Family | |
IPR008210 | Phosphoenolpyruvate carboxykinase, N-terminal | Homologous Superfamily | |
IPR035078 | Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal | Domain | |
IPR035077 | Phosphoenolpyruvate carboxykinase, C-terminal P-loop domain | Domain | |
IPR013035 | Phosphoenolpyruvate carboxykinase, C-terminal | Homologous Superfamily | |
IPR018091 | Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site | Conserved Site |